Ruthenium in PDB 8rnv: Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2

All present enzymatic activity of Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2:
3.2.1.17;

The structure of Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2, PDB code: 8rnv was solved by M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	18.06 / 1.08
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.542, 78.542, 37.106, 90, 90, 90
R / Rfree (%)	15.4 / 16.7

The structure of Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2 also contains other interesting chemical elements:

Sodium	(Na)	3 atoms
Chlorine	(Cl)	2 atoms

The binding sites of Ruthenium atom in the Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2 (pdb code 8rnv). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2, PDB code: 8rnv:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in the Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru203 b:57.3 occ:0.82 O A:HOH410 2.3 60.0 1.0 OD2 A:ASP101 2.3 34.7 1.0 O A:HOH380 2.4 50.0 1.0 CG A:ASP101 3.3 32.8 1.0 O A:HOH407 3.3 49.3 1.0 OD1 A:ASP101 3.7 36.1 1.0 O A:ASP101 4.4 27.0 1.0 RU A:RU204 4.4 44.1 0.4 CB A:ASP101 4.6 27.4 1.0

Ruthenium binding site 2 out of 2 in the Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Hen Egg White Lysozyme Soaked with Cis-Ru(Dmso)4CL2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru204 b:44.1 occ:0.44 O A:HOH417 2.0 46.1 1.0 O A:HOH427 2.3 39.1 1.0 O A:HOH407 2.4 49.3 1.0 OD1 A:ASP101 2.5 36.1 1.0 O A:HOH380 3.1 50.0 1.0 O A:HOH367 3.4 52.0 1.0 CG A:ASP101 3.5 32.8 1.0 OD2 A:ASP101 4.1 34.7 1.0 RU A:RU203 4.4 57.3 0.8 O A:ASP101 4.4 27.0 1.0 O A:HOH327 4.4 33.0 1.0 CA A:ASP101 4.6 24.6 1.0 CB A:ASP101 4.7 27.4 1.0

M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska. Exploring the Coordination Chemistry of Ruthenium Complexes with Lysozymes: Structural and in Solution Studies To Be Published.