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Ruthenium in PDB 5e9r: X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole

Enzymatic activity of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole

All present enzymatic activity of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole, PDB code: 5e9r was solved by A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.50 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.500, 78.500, 36.309, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 23.7

Other elements in 5e9r:

The structure of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole (pdb code 5e9r). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole, PDB code: 5e9r:

Ruthenium binding site 1 out of 1 in 5e9r

Go back to Ruthenium Binding Sites List in 5e9r
Ruthenium binding site 1 out of 1 in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru201

b:46.2
occ:0.80
 RU1 A:5LN201 0.0 46.2 0.8
C1 A:5LN201 1.9 41.9 0.4
C2 A:5LN201 1.9 38.8 0.8
O2 A:5LN201 2.2 44.8 0.8
O1 A:5LN201 2.3 35.5 0.8
NE2 A:HIS15 2.3 40.4 1.0
CL1 A:5LN201 2.4 47.2 0.8
OC1 A:5LN201 2.9 41.3 0.4
OC2 A:5LN201 3.0 36.3 0.8
CE1 A:HIS15 3.2 39.5 1.0
C A:CMO202 3.3 35.4 0.4
CD2 A:HIS15 3.4 40.0 1.0
O A:CMO202 3.9 36.2 0.4
OD1 A:ASP87 4.2 45.8 1.0
ND1 A:HIS15 4.4 38.5 1.0
CG A:HIS15 4.5 38.3 1.0
CG A:ARG14 4.6 50.4 1.0
OG1 A:THR89 4.9 35.1 1.0

Reference:

A.Merlino, A.Merlino. N/A N/A.
Page generated: Thu Oct 10 12:58:02 2024

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