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Ruthenium in PDB 8rnx: Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)]

Enzymatic activity of Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)]

All present enzymatic activity of Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)]:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)], PDB code: 8rnx was solved by M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.16 / 1.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.993, 78.993, 37.002, 90, 90, 90
R / Rfree (%) 22.2 / 24.8

Other elements in 8rnx:

The structure of Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)] also contains other interesting chemical elements:

Sodium (Na) 2 atoms
Chlorine (Cl) 3 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)] (pdb code 8rnx). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)], PDB code: 8rnx:

Ruthenium binding site 1 out of 1 in 8rnx

Go back to Ruthenium Binding Sites List in 8rnx
Ruthenium binding site 1 out of 1 in the Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)]


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Hen Egg White Lysozyme Soaked with [Hisq][Trans-RUCL4(Dmso)(Isq)] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru207

b:51.2
occ:0.63
 O A:HOH377 2.1 44.8 1.0
O A:HOH368 2.3 47.0 1.0
O A:HOH392 2.3 46.6 1.0
OD2 A:ASP101 2.3 36.6 1.0
CG A:ASP101 3.3 32.8 1.0
OD1 A:ASP101 3.5 37.6 1.0
CB A:ASP101 4.6 27.3 1.0
O A:ASP101 4.7 30.4 1.0

Reference:

M.Oszajca, M.Flejszar, A.Szura, P.Drozdz, M.Brindell, K.Kurpiewska. Exploring the Coordination Chemistry of Ruthenium Complexes with Lysozymes: Structural and in Solution Studies To Be Published.
Page generated: Thu Oct 10 13:16:03 2024

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