Ruthenium in PDB 8cmm: Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide

The structure of Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide, PDB code: 8cmm was solved by T.D.Prieto Otoya, C.J.Cardin, K.M.Mcquaid, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.20 / 0.90
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.395, 48.645, 54.192, 90, 90, 90
R / Rfree (%)	16.8 / 19

The binding sites of Ruthenium atom in the Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide (pdb code 8cmm). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide, PDB code: 8cmm:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in the Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru101 b:9.7 occ:0.46 RU01 A:V70101 0.0 9.7 0.5 N04 A:V70101 2.0 9.5 0.5 N02 A:V70101 2.0 11.1 0.5 N06 A:V70101 2.1 11.7 0.5 N03 A:V70101 2.1 11.4 0.5 N05 A:V70101 2.1 12.6 0.5 N01 A:V70101 2.1 10.6 0.5 H24 A:V70101 2.4 9.4 0.5 H26 A:V70101 2.7 9.6 0.5 C03 A:V70101 2.9 11.0 0.5 C01 A:V70101 2.9 12.0 0.5 C08 A:V70101 2.9 11.1 0.5 C07 A:V70101 2.9 10.9 0.5 C04 A:V70101 2.9 11.0 0.5 C10 A:V70101 2.9 10.0 0.5 C20 A:V70101 3.0 10.7 0.5 C12 A:V70101 3.1 13.9 0.5 C22 A:V70101 3.1 11.6 0.5 C19 A:V70101 3.1 12.4 0.5 H07 A:V70101 3.1 10.4 0.5 H03 A:V70101 3.2 11.6 0.5 H09 A:V70101 3.2 10.5 0.5 H06 A:V70101 3.2 11.6 0.5 O A:HOH242 4.0 19.7 1.0 H21 A:V7F102 4.0 9.7 0.8 H15 A:V7F102 4.2 9.6 0.0 C11 A:V70101 4.3 13.4 0.5 C02 A:V70101 4.3 11.0 0.5 C17 A:V70101 4.3 12.6 0.5 C23 A:V70101 4.3 10.7 0.5 C13 A:V70101 4.3 12.0 0.5 C14 A:V70101 4.3 10.0 0.5 C05 A:V70101 4.3 12.5 0.5 C21 A:V70101 4.4 15.0 0.5 C34 A:V70101 4.4 13.2 0.5 C15 A:V70101 4.4 12.8 0.5 H05 A:V70101 4.6 9.7 0.5 H25 A:V70101 4.6 10.0 0.5 C25 A:V70101 4.8 14.8 0.5 C36 A:V7F102 4.8 11.3 1.0 C24 A:V70101 4.8 12.8 0.5 C33 A:V70101 4.9 12.9 0.5 C06 A:V70101 4.9 14.6 0.5 C18 A:V70101 4.9 11.9 0.5 C30 A:V7F102 4.9 10.6 1.0

Ruthenium binding site 2 out of 2 in the Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru102 b:9.9 occ:1.00 RU01 A:V7F102 0.0 9.9 1.0 N04 A:V7F102 2.0 9.3 1.0 N02 A:V7F102 2.0 9.5 1.0 N06 A:V7F102 2.1 10.3 1.0 N05 A:V7F102 2.1 9.9 1.0 N01 A:V7F102 2.1 10.1 1.0 N03 A:V7F102 2.1 9.4 1.0 H24 A:V7F102 2.4 9.5 1.0 H26 A:V7F102 2.7 10.1 0.9 C03 A:V7F102 2.9 9.2 1.0 C07 A:V7F102 2.9 9.4 1.0 C08 A:V7F102 2.9 8.8 1.0 C04 A:V7F102 2.9 9.6 1.0 C10 A:V7F102 2.9 9.6 1.0 C01 A:V7F102 2.9 9.7 1.0 C22 A:V7F102 3.1 10.3 1.0 C20 A:V7F102 3.1 10.4 1.0 C19 A:V7F102 3.1 10.2 1.0 C12 A:V7F102 3.1 9.9 1.0 H09 A:V7F102 3.2 9.4 0.0 H07 A:V7F102 3.2 8.7 0.9 H06 A:V7F102 3.2 9.2 0.9 H03 A:V7F102 3.2 8.0 1.0 C17 A:V7F102 4.3 10.0 1.0 C23 A:V7F102 4.3 10.3 1.0 C13 A:V7F102 4.3 10.0 1.0 C02 A:V7F102 4.3 9.5 1.0 C11 A:V7F102 4.3 9.6 1.0 C14 A:V7F102 4.3 9.3 1.0 C34 A:V7F102 4.4 10.3 1.0 C05 A:V7F102 4.4 10.3 1.0 C21 A:V7F102 4.4 11.6 1.0 C15 A:V7F102 4.4 10.7 1.0 O A:HOH237 4.5 13.6 1.0 H25 A:V7F102 4.6 9.8 0.0 H05 A:V7F102 4.6 7.2 1.0 H2 A:DA5 4.7 8.8 1.0 H23 A:V70101 4.8 10.2 0.5 C33 A:V7F102 4.8 10.4 1.0 C06 A:V7F102 4.9 10.6 1.0 C24 A:V7F102 4.9 11.5 1.0 C25 A:V7F102 4.9 11.0 1.0 C18 A:V7F102 4.9 10.2 1.0 C2 A:DA5 4.9 11.6 1.0 N3 A:DA5 5.0 11.1 1.0 C26 A:V7F102 5.0 10.0 1.0

T.D.Prieto Otoya, C.J.Cardin, K.M.Mcquaid. Ruthenium Polypyridyl Complexes Bound to Dna Mismatch Oligonucleotide To Be Published.