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Ruthenium in PDB 7dl4: Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct

Protein crystallography data

The structure of Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct, PDB code: 7dl4 was solved by L.L.Xie, W.M.Wang, H.F.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.54 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 184.983, 38.494, 95.516, 90, 105.53, 90
R / Rfree (%) 20.8 / 26.8

Other elements in 7dl4:

The structure of Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct (pdb code 7dl4). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct, PDB code: 7dl4:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 7dl4

Go back to Ruthenium Binding Sites List in 7dl4
Ruthenium binding site 1 out of 2 in the Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru601

b:70.7
occ:0.70
N A:NO606 1.8 76.4 0.8
O11 A:HZQ602 2.0 70.7 0.8
N6 A:HZQ602 2.0 65.3 0.8
CL A:CL604 2.4 78.0 0.8
CL A:CL605 2.4 87.2 0.8
CL A:CL603 2.4 61.8 0.8
C2 A:HZQ602 2.7 64.5 0.8
C5 A:HZQ602 2.7 64.2 0.8
O A:NO606 2.9 66.4 0.8
C12 A:HZQ602 3.1 60.9 0.8
NE2 A:HIS146 4.0 70.1 1.0
C10 A:HZQ602 4.1 63.5 0.8
C1 A:HZQ602 4.1 61.3 0.8
C9 A:HZQ602 4.4 62.4 0.8
CE1 A:HIS146 4.7 68.4 1.0
C4 A:HZQ602 4.7 66.8 0.8
CD2 A:HIS146 5.0 56.4 1.0

Ruthenium binding site 2 out of 2 in 7dl4

Go back to Ruthenium Binding Sites List in 7dl4
Ruthenium binding site 2 out of 2 in the Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Crystal Structure of Human Serum Albumin and Nitrosylruthenium Complex Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru607

b:67.4
occ:0.45
N A:NO612 1.8 74.4 0.8
O2 A:GOL608 2.0 64.9 0.8
O1 A:GOL608 2.0 66.8 0.8
CL A:CL611 2.3 69.5 0.6
CL A:CL609 2.3 73.5 0.6
CL A:CL610 2.4 66.5 0.6
C2 A:GOL608 2.5 65.1 0.8
C1 A:GOL608 2.8 54.4 0.8
O A:NO612 2.9 57.3 0.8
C3 A:GOL608 3.9 67.6 0.8
O3 A:GOL608 4.4 50.1 0.8
CE1 A:PHE134 4.5 58.4 1.0
CD1 A:PHE134 4.7 56.9 1.0

Reference:

L.L.Xie, W.M.Wang, H.F.Wang. Structural and Photodynamic Studies on Nitrosylruthenium Complexed Serum Albumin To Be Published.
Page generated: Fri Dec 17 11:25:08 2021

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