Ruthenium in PDB 6uiw: Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 33;

Binding sites:

The binding sites of Ruthenium atom in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State (pdb code 6uiw). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 33 binding sites of Ruthenium where determined in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State, PDB code: 6uiw:
Jump to Ruthenium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Ruthenium binding site 1 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru501 b:20.0 occ:1.00 RU2 A:R2R501 0.0 20.0 1.0 O13 A:R2R501 1.8 20.0 1.0 O06 A:R2R501 1.8 20.0 1.0 N01 A:R2R501 2.0 20.0 1.0 N05 A:R2R501 2.0 20.0 1.0 N03 A:R2R501 2.0 20.0 1.0 N04 A:R2R501 2.0 20.0 1.0 RU1 A:R2R501 3.7 20.0 1.0 RU3 A:R2R501 3.7 20.0 1.0 N16 A:R2R501 4.2 20.0 1.0 N11 A:R2R501 4.2 20.0 1.0 N19 A:R2R501 4.2 20.0 1.0 N17 A:R2R501 4.2 20.0 1.0 N18 A:R2R501 4.2 20.0 1.0 N12 A:R2R501 4.2 20.0 1.0 N09 A:R2R501 4.2 20.0 1.0 N10 A:R2R501 4.2 20.0 1.0 NH1 A:ARG124 4.5 0.7 1.0 CZ A:ARG124 4.9 0.7 1.0

Ruthenium binding site 2 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru501 b:20.0 occ:1.00 RU3 A:R2R501 0.0 20.0 1.0 O06 A:R2R501 1.8 20.0 1.0 N09 A:R2R501 2.0 20.0 1.0 N10 A:R2R501 2.0 20.0 1.0 N12 A:R2R501 2.0 20.0 1.0 N11 A:R2R501 2.0 20.0 1.0 N08 A:R2R501 2.0 20.0 1.0 RU2 A:R2R501 3.7 20.0 1.0 NH2 A:ARG124 4.0 0.7 1.0 N03 A:R2R501 4.2 20.0 1.0 N01 A:R2R501 4.2 20.0 1.0 N05 A:R2R501 4.2 20.0 1.0 N04 A:R2R501 4.2 20.0 1.0 CB A:PHE39 4.3 0.3 1.0 O A:PHE39 4.6 0.3 1.0 CZ A:ARG124 4.8 0.7 1.0 NH1 A:ARG124 4.9 0.7 1.0

Ruthenium binding site 3 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 3 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru501 b:20.0 occ:1.00 RU1 A:R2R501 0.0 20.0 1.0 O13 A:R2R501 1.8 20.0 1.0 N18 A:R2R501 2.0 20.0 1.0 N17 A:R2R501 2.0 20.0 1.0 N19 A:R2R501 2.0 20.0 1.0 N16 A:R2R501 2.0 20.0 1.0 N15 A:R2R501 2.0 20.0 1.0 RU2 A:R2R501 3.7 20.0 1.0 N04 A:R2R501 4.2 20.0 1.0 N01 A:R2R501 4.2 20.0 1.0 N05 A:R2R501 4.2 20.0 1.0 N03 A:R2R501 4.2 20.0 1.0 CD1 A:ILE120 4.7 87.5 1.0 CG2 A:ILE120 4.8 87.5 1.0 CZ3 A:TRP117 4.8 83.1 1.0

Ruthenium binding site 4 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 4 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Ru501 b:20.0 occ:1.00 RU2 B:R2R501 0.0 20.0 1.0 O13 B:R2R501 1.8 20.0 1.0 O06 B:R2R501 1.8 20.0 1.0 N01 B:R2R501 2.0 20.0 1.0 N03 B:R2R501 2.0 20.0 1.0 N05 B:R2R501 2.0 20.0 1.0 N04 B:R2R501 2.0 20.0 1.0 RU1 B:R2R501 3.7 20.0 1.0 RU3 B:R2R501 3.7 20.0 1.0 N19 B:R2R501 4.2 20.0 1.0 N17 B:R2R501 4.2 20.0 1.0 N16 B:R2R501 4.2 20.0 1.0 N18 B:R2R501 4.2 20.0 1.0 N11 B:R2R501 4.2 20.0 1.0 N12 B:R2R501 4.2 20.0 1.0 N09 B:R2R501 4.2 20.0 1.0 N10 B:R2R501 4.2 20.0 1.0 NH1 B:ARG124 4.5 0.7 1.0 CZ B:ARG124 4.9 0.7 1.0

Ruthenium binding site 5 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 5 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Ru501 b:20.0 occ:1.00 RU3 B:R2R501 0.0 20.0 1.0 O06 B:R2R501 1.8 20.0 1.0 N09 B:R2R501 2.0 20.0 1.0 N12 B:R2R501 2.0 20.0 1.0 N10 B:R2R501 2.0 20.0 1.0 N11 B:R2R501 2.0 20.0 1.0 N08 B:R2R501 2.0 20.0 1.0 RU2 B:R2R501 3.7 20.0 1.0 NH2 B:ARG124 4.0 0.7 1.0 N03 B:R2R501 4.2 20.0 1.0 N01 B:R2R501 4.2 20.0 1.0 N05 B:R2R501 4.2 20.0 1.0 N04 B:R2R501 4.2 20.0 1.0 CB B:PHE39 4.3 0.3 1.0 O B:PHE39 4.6 0.3 1.0 CZ B:ARG124 4.8 0.7 1.0 NH1 B:ARG124 4.9 0.7 1.0

Ruthenium binding site 6 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 6 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ B:Ru501 b:20.0 occ:1.00 RU1 B:R2R501 0.0 20.0 1.0 O13 B:R2R501 1.8 20.0 1.0 N18 B:R2R501 2.0 20.0 1.0 N17 B:R2R501 2.0 20.0 1.0 N19 B:R2R501 2.0 20.0 1.0 N16 B:R2R501 2.0 20.0 1.0 N15 B:R2R501 2.0 20.0 1.0 RU2 B:R2R501 3.7 20.0 1.0 N04 B:R2R501 4.2 20.0 1.0 N01 B:R2R501 4.2 20.0 1.0 N03 B:R2R501 4.2 20.0 1.0 N05 B:R2R501 4.2 20.0 1.0 CD1 B:ILE120 4.7 87.5 1.0 CG2 B:ILE120 4.8 87.5 1.0 CZ3 B:TRP117 4.8 83.1 1.0

Ruthenium binding site 7 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 7 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ C:Ru501 b:20.0 occ:1.00 RU2 C:R2R501 0.0 20.0 1.0 O13 C:R2R501 1.8 20.0 1.0 O06 C:R2R501 1.8 20.0 1.0 N01 C:R2R501 2.0 20.0 1.0 N05 C:R2R501 2.0 20.0 1.0 N03 C:R2R501 2.0 20.0 1.0 N04 C:R2R501 2.0 20.0 1.0 RU1 C:R2R501 3.7 20.0 1.0 RU3 C:R2R501 3.7 20.0 1.0 N16 C:R2R501 4.2 20.0 1.0 N19 C:R2R501 4.2 20.0 1.0 N11 C:R2R501 4.2 20.0 1.0 N18 C:R2R501 4.2 20.0 1.0 N17 C:R2R501 4.2 20.0 1.0 N10 C:R2R501 4.2 20.0 1.0 N09 C:R2R501 4.2 20.0 1.0 N12 C:R2R501 4.2 20.0 1.0 NH1 C:ARG124 4.5 0.7 1.0 CZ C:ARG124 4.9 0.7 1.0

Ruthenium binding site 8 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 8 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ C:Ru501 b:20.0 occ:1.00 RU3 C:R2R501 0.0 20.0 1.0 O06 C:R2R501 1.8 20.0 1.0 N10 C:R2R501 2.0 20.0 1.0 N09 C:R2R501 2.0 20.0 1.0 N12 C:R2R501 2.0 20.0 1.0 N11 C:R2R501 2.0 20.0 1.0 N08 C:R2R501 2.0 20.0 1.0 RU2 C:R2R501 3.7 20.0 1.0 NH2 C:ARG124 4.0 0.7 1.0 N03 C:R2R501 4.2 20.0 1.0 N05 C:R2R501 4.2 20.0 1.0 N01 C:R2R501 4.2 20.0 1.0 N04 C:R2R501 4.2 20.0 1.0 CB C:PHE39 4.3 0.3 1.0 O C:PHE39 4.6 0.3 1.0 CZ C:ARG124 4.8 0.7 1.0 NH1 C:ARG124 4.9 0.7 1.0

Ruthenium binding site 9 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 9 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ C:Ru501 b:20.0 occ:1.00 RU1 C:R2R501 0.0 20.0 1.0 O13 C:R2R501 1.8 20.0 1.0 N17 C:R2R501 2.0 20.0 1.0 N19 C:R2R501 2.0 20.0 1.0 N18 C:R2R501 2.0 20.0 1.0 N15 C:R2R501 2.0 20.0 1.0 N16 C:R2R501 2.0 20.0 1.0 RU2 C:R2R501 3.7 20.0 1.0 N04 C:R2R501 4.2 20.0 1.0 N01 C:R2R501 4.2 20.0 1.0 N03 C:R2R501 4.2 20.0 1.0 N05 C:R2R501 4.2 20.0 1.0 CD1 C:ILE120 4.7 87.5 1.0 CG2 C:ILE120 4.8 87.5 1.0 CZ3 C:TRP117 4.8 83.1 1.0

Ruthenium binding site 10 out of 33 in the Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 10 of Cryo-Em Structure of Human CALHM2 in A Ruthenium Red-Bound Inhibited State within 5.0Å range: probe atom residue distance (Å) B Occ D:Ru501 b:20.0 occ:1.00 RU2 D:R2R501 0.0 20.0 1.0 O13 D:R2R501 1.8 20.0 1.0 O06 D:R2R501 1.8 20.0 1.0 N01 D:R2R501 2.0 20.0 1.0 N05 D:R2R501 2.0 20.0 1.0 N03 D:R2R501 2.0 20.0 1.0 N04 D:R2R501 2.0 20.0 1.0 RU3 D:R2R501 3.7 20.0 1.0 RU1 D:R2R501 3.7 20.0 1.0 N11 D:R2R501 4.2 20.0 1.0 N16 D:R2R501 4.2 20.0 1.0 N09 D:R2R501 4.2 20.0 1.0 N10 D:R2R501 4.2 20.0 1.0 N17 D:R2R501 4.2 20.0 1.0 N18 D:R2R501 4.2 20.0 1.0 N12 D:R2R501 4.2 20.0 1.0 N19 D:R2R501 4.2 20.0 1.0 NH1 D:ARG124 4.5 0.7 1.0 CZ D:ARG124 4.9 0.7 1.0

W.Choi, N.Clemente, W.Sun, J.Du, W.Lu. The Structures and Gating Mechanism of Human Calcium Homeostasis Modulator 2 Nature 2019.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-019-1781-3