Ruthenium in PDB 6rsp: L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
Protein crystallography data
The structure of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga), PDB code: 6rsp
was solved by
K.T.Mcquaid,
J.P.Hall,
C.J.Cardin,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.31 /
1.91
|
Space group
|
P 43
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.108,
47.108,
32.460,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.6 /
21.1
|
Other elements in 6rsp:
The structure of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) also contains other interesting chemical elements:
Ruthenium Binding Sites:
The binding sites of Ruthenium atom in the L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
(pdb code 6rsp). This binding sites where shown within
5.0 Angstroms radius around Ruthenium atom.
In total 4 binding sites of Ruthenium where determined in the
L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga), PDB code: 6rsp:
Jump to Ruthenium binding site number:
1;
2;
3;
4;
Ruthenium binding site 1 out
of 4 in 6rsp
Go back to
Ruthenium Binding Sites List in 6rsp
Ruthenium binding site 1 out
of 4 in the L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 1 of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ru102
b:47.8
occ:0.24
|
RU19
|
A:KHK102
|
0.0
|
47.8
|
0.2
|
RU19
|
A:KHK102
|
0.1
|
46.8
|
0.8
|
N37
|
A:KHK102
|
1.9
|
47.5
|
0.8
|
N20
|
A:KHK102
|
2.0
|
51.2
|
0.8
|
N24
|
A:KHK102
|
2.0
|
46.6
|
0.8
|
N37
|
A:KHK102
|
2.0
|
48.4
|
0.2
|
N38
|
A:KHK102
|
2.0
|
47.5
|
0.2
|
N15
|
A:KHK102
|
2.0
|
51.1
|
0.2
|
N20
|
A:KHK102
|
2.0
|
48.5
|
0.2
|
N48
|
A:KHK102
|
2.0
|
46.5
|
0.2
|
N24
|
A:KHK102
|
2.0
|
48.1
|
0.2
|
N15
|
A:KHK102
|
2.0
|
48.5
|
0.8
|
N38
|
A:KHK102
|
2.0
|
48.3
|
0.8
|
N48
|
A:KHK102
|
2.1
|
48.2
|
0.8
|
C36
|
A:KHK102
|
2.7
|
46.7
|
0.8
|
C28
|
A:KHK102
|
2.7
|
46.3
|
0.8
|
C17
|
A:KHK102
|
2.8
|
52.3
|
0.8
|
C36
|
A:KHK102
|
2.8
|
48.7
|
0.2
|
C16
|
A:KHK102
|
2.8
|
50.6
|
0.8
|
C43
|
A:KHK102
|
2.8
|
46.7
|
0.2
|
C17
|
A:KHK102
|
2.8
|
50.6
|
0.2
|
C47
|
A:KHK102
|
2.8
|
46.4
|
0.2
|
C16
|
A:KHK102
|
2.8
|
52.2
|
0.2
|
C28
|
A:KHK102
|
2.8
|
48.6
|
0.2
|
C43
|
A:KHK102
|
2.8
|
48.8
|
0.8
|
C47
|
A:KHK102
|
2.9
|
48.7
|
0.8
|
C21
|
A:KHK102
|
3.1
|
53.4
|
0.8
|
C39
|
A:KHK102
|
3.1
|
48.5
|
0.8
|
C35
|
A:KHK102
|
3.1
|
47.9
|
0.8
|
C39
|
A:KHK102
|
3.1
|
47.9
|
0.2
|
C35
|
A:KHK102
|
3.1
|
49.3
|
0.2
|
C14
|
A:KHK102
|
3.1
|
53.6
|
0.2
|
C25
|
A:KHK102
|
3.1
|
45.7
|
0.8
|
C21
|
A:KHK102
|
3.1
|
47.5
|
0.2
|
C51
|
A:KHK102
|
3.1
|
45.8
|
0.2
|
C14
|
A:KHK102
|
3.1
|
47.6
|
0.8
|
C25
|
A:KHK102
|
3.1
|
48.5
|
0.2
|
C51
|
A:KHK102
|
3.2
|
48.4
|
0.8
|
H66
|
A:KHK102
|
3.2
|
58.2
|
0.8
|
H78
|
A:KHK102
|
3.2
|
64.1
|
0.8
|
H56
|
A:KHK102
|
3.2
|
64.3
|
0.2
|
H78
|
A:KHK102
|
3.2
|
57.0
|
0.2
|
H66
|
A:KHK102
|
3.2
|
57.5
|
0.2
|
H65
|
A:KHK102
|
3.2
|
59.1
|
0.2
|
H65
|
A:KHK102
|
3.2
|
57.5
|
0.8
|
H58
|
A:KHK102
|
3.2
|
54.9
|
0.8
|
H73
|
A:KHK102
|
3.2
|
54.9
|
0.2
|
H58
|
A:KHK102
|
3.3
|
58.2
|
0.2
|
H56
|
A:KHK102
|
3.3
|
57.1
|
0.8
|
H73
|
A:KHK102
|
3.3
|
58.0
|
0.8
|
C18
|
A:KHK102
|
4.1
|
52.2
|
0.2
|
C11
|
A:KHK102
|
4.1
|
52.2
|
0.8
|
C18
|
A:KHK102
|
4.1
|
55.7
|
0.8
|
C32
|
A:KHK102
|
4.1
|
47.1
|
0.8
|
C29
|
A:KHK102
|
4.1
|
45.9
|
0.8
|
C11
|
A:KHK102
|
4.1
|
55.7
|
0.2
|
C32
|
A:KHK102
|
4.2
|
49.1
|
0.2
|
C42
|
A:KHK102
|
4.2
|
47.2
|
0.2
|
C46
|
A:KHK102
|
4.2
|
45.9
|
0.2
|
C29
|
A:KHK102
|
4.2
|
49.0
|
0.2
|
C42
|
A:KHK102
|
4.2
|
49.0
|
0.8
|
C34
|
A:KHK102
|
4.3
|
48.0
|
0.8
|
C46
|
A:KHK102
|
4.3
|
49.0
|
0.8
|
C22
|
A:KHK102
|
4.3
|
55.0
|
0.8
|
C34
|
A:KHK102
|
4.3
|
49.2
|
0.2
|
C40
|
A:KHK102
|
4.3
|
48.2
|
0.2
|
C40
|
A:KHK102
|
4.3
|
49.2
|
0.8
|
C13
|
A:KHK102
|
4.3
|
55.1
|
0.2
|
C26
|
A:KHK102
|
4.3
|
45.6
|
0.8
|
C22
|
A:KHK102
|
4.3
|
48.0
|
0.2
|
C50
|
A:KHK102
|
4.3
|
45.6
|
0.2
|
C13
|
A:KHK102
|
4.3
|
48.3
|
0.8
|
C26
|
A:KHK102
|
4.3
|
49.1
|
0.2
|
C50
|
A:KHK102
|
4.4
|
49.4
|
0.8
|
O2
|
B:DC2
|
4.6
|
44.4
|
1.0
|
C33
|
A:KHK102
|
4.7
|
48.0
|
0.8
|
C27
|
A:KHK102
|
4.7
|
46.0
|
0.8
|
C23
|
A:KHK102
|
4.7
|
55.5
|
0.8
|
C33
|
A:KHK102
|
4.7
|
49.2
|
0.2
|
C23
|
A:KHK102
|
4.7
|
49.4
|
0.2
|
C12
|
A:KHK102
|
4.7
|
55.5
|
0.2
|
C41
|
A:KHK102
|
4.7
|
48.0
|
0.2
|
C12
|
A:KHK102
|
4.7
|
49.6
|
0.8
|
C49
|
A:KHK102
|
4.7
|
45.9
|
0.2
|
C41
|
A:KHK102
|
4.7
|
49.1
|
0.8
|
C27
|
A:KHK102
|
4.7
|
49.2
|
0.2
|
C49
|
A:KHK102
|
4.8
|
49.4
|
0.8
|
N2
|
A:DG9
|
4.8
|
58.1
|
1.0
|
O4'
|
B:DC2
|
5.0
|
51.2
|
1.0
|
|
Ruthenium binding site 2 out
of 4 in 6rsp
Go back to
Ruthenium Binding Sites List in 6rsp
Ruthenium binding site 2 out
of 4 in the L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 2 of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ru102
b:46.8
occ:0.76
|
RU19
|
A:KHK102
|
0.0
|
46.8
|
0.8
|
RU19
|
A:KHK102
|
0.1
|
47.8
|
0.2
|
N37
|
A:KHK102
|
1.9
|
48.4
|
0.2
|
N24
|
A:KHK102
|
2.0
|
48.1
|
0.2
|
N38
|
A:KHK102
|
2.0
|
48.3
|
0.8
|
N20
|
A:KHK102
|
2.0
|
48.5
|
0.2
|
N15
|
A:KHK102
|
2.0
|
48.5
|
0.8
|
N37
|
A:KHK102
|
2.0
|
47.5
|
0.8
|
N24
|
A:KHK102
|
2.0
|
46.6
|
0.8
|
N20
|
A:KHK102
|
2.0
|
51.2
|
0.8
|
N48
|
A:KHK102
|
2.0
|
48.2
|
0.8
|
N48
|
A:KHK102
|
2.0
|
46.5
|
0.2
|
N15
|
A:KHK102
|
2.0
|
51.1
|
0.2
|
N38
|
A:KHK102
|
2.1
|
47.5
|
0.2
|
C36
|
A:KHK102
|
2.7
|
48.7
|
0.2
|
C28
|
A:KHK102
|
2.7
|
48.6
|
0.2
|
C43
|
A:KHK102
|
2.8
|
48.8
|
0.8
|
C16
|
A:KHK102
|
2.8
|
50.6
|
0.8
|
C17
|
A:KHK102
|
2.8
|
50.6
|
0.2
|
C28
|
A:KHK102
|
2.8
|
46.3
|
0.8
|
C36
|
A:KHK102
|
2.8
|
46.7
|
0.8
|
C17
|
A:KHK102
|
2.8
|
52.3
|
0.8
|
C16
|
A:KHK102
|
2.8
|
52.2
|
0.2
|
C47
|
A:KHK102
|
2.8
|
48.7
|
0.8
|
C47
|
A:KHK102
|
2.8
|
46.4
|
0.2
|
C43
|
A:KHK102
|
2.8
|
46.7
|
0.2
|
C39
|
A:KHK102
|
3.0
|
48.5
|
0.8
|
C35
|
A:KHK102
|
3.0
|
49.3
|
0.2
|
C21
|
A:KHK102
|
3.0
|
47.5
|
0.2
|
C14
|
A:KHK102
|
3.1
|
47.6
|
0.8
|
C25
|
A:KHK102
|
3.1
|
48.5
|
0.2
|
C25
|
A:KHK102
|
3.1
|
45.7
|
0.8
|
C21
|
A:KHK102
|
3.1
|
53.4
|
0.8
|
C35
|
A:KHK102
|
3.1
|
47.9
|
0.8
|
C51
|
A:KHK102
|
3.1
|
45.8
|
0.2
|
C39
|
A:KHK102
|
3.1
|
47.9
|
0.2
|
C14
|
A:KHK102
|
3.1
|
53.6
|
0.2
|
C51
|
A:KHK102
|
3.1
|
48.4
|
0.8
|
H66
|
A:KHK102
|
3.2
|
58.2
|
0.8
|
H78
|
A:KHK102
|
3.2
|
57.0
|
0.2
|
H56
|
A:KHK102
|
3.2
|
57.1
|
0.8
|
H65
|
A:KHK102
|
3.2
|
59.1
|
0.2
|
H58
|
A:KHK102
|
3.2
|
54.9
|
0.8
|
H73
|
A:KHK102
|
3.2
|
54.9
|
0.2
|
H78
|
A:KHK102
|
3.2
|
64.1
|
0.8
|
H66
|
A:KHK102
|
3.3
|
57.5
|
0.2
|
H58
|
A:KHK102
|
3.3
|
58.2
|
0.2
|
H65
|
A:KHK102
|
3.3
|
57.5
|
0.8
|
H56
|
A:KHK102
|
3.3
|
64.3
|
0.2
|
H73
|
A:KHK102
|
3.3
|
58.0
|
0.8
|
C32
|
A:KHK102
|
4.1
|
49.1
|
0.2
|
C18
|
A:KHK102
|
4.1
|
52.2
|
0.2
|
C11
|
A:KHK102
|
4.1
|
52.2
|
0.8
|
C29
|
A:KHK102
|
4.1
|
49.0
|
0.2
|
C18
|
A:KHK102
|
4.1
|
55.7
|
0.8
|
C42
|
A:KHK102
|
4.1
|
49.0
|
0.8
|
C11
|
A:KHK102
|
4.1
|
55.7
|
0.2
|
C29
|
A:KHK102
|
4.2
|
45.9
|
0.8
|
C32
|
A:KHK102
|
4.2
|
47.1
|
0.8
|
C46
|
A:KHK102
|
4.2
|
49.0
|
0.8
|
C34
|
A:KHK102
|
4.2
|
49.2
|
0.2
|
C46
|
A:KHK102
|
4.2
|
45.9
|
0.2
|
C40
|
A:KHK102
|
4.2
|
49.2
|
0.8
|
C42
|
A:KHK102
|
4.2
|
47.2
|
0.2
|
C22
|
A:KHK102
|
4.2
|
48.0
|
0.2
|
C13
|
A:KHK102
|
4.3
|
48.3
|
0.8
|
C26
|
A:KHK102
|
4.3
|
49.1
|
0.2
|
C26
|
A:KHK102
|
4.3
|
45.6
|
0.8
|
C34
|
A:KHK102
|
4.3
|
48.0
|
0.8
|
C22
|
A:KHK102
|
4.3
|
55.0
|
0.8
|
C50
|
A:KHK102
|
4.3
|
45.6
|
0.2
|
C40
|
A:KHK102
|
4.3
|
48.2
|
0.2
|
C13
|
A:KHK102
|
4.3
|
55.1
|
0.2
|
C50
|
A:KHK102
|
4.4
|
49.4
|
0.8
|
O2
|
B:DC2
|
4.6
|
44.4
|
1.0
|
C33
|
A:KHK102
|
4.6
|
49.2
|
0.2
|
C41
|
A:KHK102
|
4.7
|
49.1
|
0.8
|
C23
|
A:KHK102
|
4.7
|
49.4
|
0.2
|
C27
|
A:KHK102
|
4.7
|
49.2
|
0.2
|
C12
|
A:KHK102
|
4.7
|
49.6
|
0.8
|
C27
|
A:KHK102
|
4.7
|
46.0
|
0.8
|
C23
|
A:KHK102
|
4.7
|
55.5
|
0.8
|
C33
|
A:KHK102
|
4.7
|
48.0
|
0.8
|
C12
|
A:KHK102
|
4.7
|
55.5
|
0.2
|
C41
|
A:KHK102
|
4.8
|
48.0
|
0.2
|
C49
|
A:KHK102
|
4.8
|
45.9
|
0.2
|
C49
|
A:KHK102
|
4.8
|
49.4
|
0.8
|
N2
|
A:DG9
|
4.8
|
58.1
|
1.0
|
O4'
|
B:DC2
|
4.9
|
51.2
|
1.0
|
H67
|
A:KHK102
|
5.0
|
59.0
|
0.8
|
H64
|
A:KHK102
|
5.0
|
59.0
|
0.2
|
|
Ruthenium binding site 3 out
of 4 in 6rsp
Go back to
Ruthenium Binding Sites List in 6rsp
Ruthenium binding site 3 out
of 4 in the L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 3 of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ru102
b:46.6
occ:0.46
|
RU19
|
B:KHK102
|
0.0
|
46.6
|
0.5
|
RU19
|
B:KHK102
|
0.0
|
46.3
|
0.5
|
N20
|
B:KHK102
|
2.0
|
51.2
|
0.5
|
N37
|
B:KHK102
|
2.0
|
47.6
|
0.5
|
N37
|
B:KHK102
|
2.0
|
48.2
|
0.5
|
N38
|
B:KHK102
|
2.0
|
47.6
|
0.5
|
N24
|
B:KHK102
|
2.0
|
46.0
|
0.5
|
N38
|
B:KHK102
|
2.0
|
48.2
|
0.5
|
N15
|
B:KHK102
|
2.0
|
51.2
|
0.5
|
N15
|
B:KHK102
|
2.0
|
48.7
|
0.5
|
N20
|
B:KHK102
|
2.0
|
48.7
|
0.5
|
N48
|
B:KHK102
|
2.0
|
46.0
|
0.5
|
N24
|
B:KHK102
|
2.0
|
48.9
|
0.5
|
N48
|
B:KHK102
|
2.1
|
48.9
|
0.5
|
C36
|
B:KHK102
|
2.7
|
48.6
|
0.5
|
C28
|
B:KHK102
|
2.8
|
45.3
|
0.5
|
C36
|
B:KHK102
|
2.8
|
46.0
|
0.5
|
C28
|
B:KHK102
|
2.8
|
48.9
|
0.5
|
C16
|
B:KHK102
|
2.8
|
50.3
|
0.5
|
C17
|
B:KHK102
|
2.8
|
52.0
|
0.5
|
C47
|
B:KHK102
|
2.8
|
45.3
|
0.5
|
C43
|
B:KHK102
|
2.8
|
46.0
|
0.5
|
C17
|
B:KHK102
|
2.8
|
50.3
|
0.5
|
C16
|
B:KHK102
|
2.8
|
52.0
|
0.5
|
C43
|
B:KHK102
|
2.8
|
48.5
|
0.5
|
C47
|
B:KHK102
|
2.8
|
48.9
|
0.5
|
C39
|
B:KHK102
|
3.0
|
47.5
|
0.5
|
C21
|
B:KHK102
|
3.1
|
53.1
|
0.5
|
C35
|
B:KHK102
|
3.1
|
47.9
|
0.5
|
C14
|
B:KHK102
|
3.1
|
53.0
|
0.5
|
C25
|
B:KHK102
|
3.1
|
43.8
|
0.5
|
C21
|
B:KHK102
|
3.1
|
47.0
|
0.5
|
C39
|
B:KHK102
|
3.1
|
47.7
|
0.5
|
C14
|
B:KHK102
|
3.1
|
47.0
|
0.5
|
C51
|
B:KHK102
|
3.1
|
43.8
|
0.5
|
C35
|
B:KHK102
|
3.1
|
47.7
|
0.5
|
C25
|
B:KHK102
|
3.1
|
48.6
|
0.5
|
C51
|
B:KHK102
|
3.1
|
48.5
|
0.5
|
H66
|
B:KHK102
|
3.2
|
57.0
|
0.5
|
H78
|
B:KHK102
|
3.2
|
63.7
|
0.5
|
H56
|
B:KHK102
|
3.2
|
63.6
|
0.5
|
H78
|
B:KHK102
|
3.2
|
56.5
|
0.5
|
H65
|
B:KHK102
|
3.2
|
57.5
|
0.5
|
H56
|
B:KHK102
|
3.2
|
56.4
|
0.5
|
H58
|
B:KHK102
|
3.2
|
52.6
|
0.5
|
H73
|
B:KHK102
|
3.2
|
52.6
|
0.5
|
H66
|
B:KHK102
|
3.2
|
57.2
|
0.5
|
H65
|
B:KHK102
|
3.3
|
57.3
|
0.5
|
H58
|
B:KHK102
|
3.3
|
58.3
|
0.5
|
H73
|
B:KHK102
|
3.3
|
58.3
|
0.5
|
C11
|
B:KHK102
|
4.1
|
52.2
|
0.5
|
C18
|
B:KHK102
|
4.1
|
55.5
|
0.5
|
C18
|
B:KHK102
|
4.1
|
52.2
|
0.5
|
C11
|
B:KHK102
|
4.1
|
55.5
|
0.5
|
C32
|
B:KHK102
|
4.1
|
49.2
|
0.5
|
C29
|
B:KHK102
|
4.1
|
44.7
|
0.5
|
C32
|
B:KHK102
|
4.2
|
46.9
|
0.5
|
C29
|
B:KHK102
|
4.2
|
49.8
|
0.5
|
C46
|
B:KHK102
|
4.2
|
44.7
|
0.5
|
C42
|
B:KHK102
|
4.2
|
46.9
|
0.5
|
C42
|
B:KHK102
|
4.2
|
49.2
|
0.5
|
C46
|
B:KHK102
|
4.2
|
49.8
|
0.5
|
C40
|
B:KHK102
|
4.2
|
48.6
|
0.5
|
C34
|
B:KHK102
|
4.3
|
48.5
|
0.5
|
C22
|
B:KHK102
|
4.3
|
54.8
|
0.5
|
C26
|
B:KHK102
|
4.3
|
43.6
|
0.5
|
C13
|
B:KHK102
|
4.3
|
54.8
|
0.5
|
C40
|
B:KHK102
|
4.3
|
48.1
|
0.5
|
C22
|
B:KHK102
|
4.3
|
47.8
|
0.5
|
C13
|
B:KHK102
|
4.3
|
47.7
|
0.5
|
C50
|
B:KHK102
|
4.3
|
43.7
|
0.5
|
C34
|
B:KHK102
|
4.3
|
48.1
|
0.5
|
C26
|
B:KHK102
|
4.3
|
49.5
|
0.5
|
C50
|
B:KHK102
|
4.4
|
49.6
|
0.5
|
C33
|
B:KHK102
|
4.7
|
49.1
|
0.5
|
C27
|
B:KHK102
|
4.7
|
44.2
|
0.5
|
C41
|
B:KHK102
|
4.7
|
49.1
|
0.5
|
C23
|
B:KHK102
|
4.7
|
55.4
|
0.5
|
C12
|
B:KHK102
|
4.7
|
49.5
|
0.5
|
O2
|
A:DC2
|
4.7
|
48.4
|
1.0
|
C12
|
B:KHK102
|
4.7
|
55.4
|
0.5
|
C23
|
B:KHK102
|
4.7
|
49.5
|
0.5
|
C49
|
B:KHK102
|
4.7
|
44.2
|
0.5
|
C41
|
B:KHK102
|
4.7
|
48.0
|
0.5
|
C33
|
B:KHK102
|
4.7
|
48.1
|
0.5
|
C27
|
B:KHK102
|
4.7
|
49.8
|
0.5
|
N2
|
B:DG9
|
4.8
|
54.8
|
1.0
|
C49
|
B:KHK102
|
4.8
|
50.0
|
0.5
|
O4'
|
A:DC2
|
5.0
|
51.5
|
1.0
|
|
Ruthenium binding site 4 out
of 4 in 6rsp
Go back to
Ruthenium Binding Sites List in 6rsp
Ruthenium binding site 4 out
of 4 in the L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga)
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 4 of L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ru102
b:46.3
occ:0.54
|
RU19
|
B:KHK102
|
0.0
|
46.3
|
0.5
|
RU19
|
B:KHK102
|
0.0
|
46.6
|
0.5
|
N37
|
B:KHK102
|
2.0
|
48.2
|
0.5
|
N38
|
B:KHK102
|
2.0
|
48.2
|
0.5
|
N24
|
B:KHK102
|
2.0
|
48.9
|
0.5
|
N24
|
B:KHK102
|
2.0
|
46.0
|
0.5
|
N37
|
B:KHK102
|
2.0
|
47.6
|
0.5
|
N38
|
B:KHK102
|
2.0
|
47.6
|
0.5
|
N15
|
B:KHK102
|
2.0
|
48.7
|
0.5
|
N20
|
B:KHK102
|
2.0
|
51.2
|
0.5
|
N20
|
B:KHK102
|
2.0
|
48.7
|
0.5
|
N48
|
B:KHK102
|
2.0
|
46.0
|
0.5
|
N15
|
B:KHK102
|
2.0
|
51.2
|
0.5
|
N48
|
B:KHK102
|
2.0
|
48.9
|
0.5
|
C36
|
B:KHK102
|
2.7
|
48.6
|
0.5
|
C28
|
B:KHK102
|
2.7
|
48.9
|
0.5
|
C28
|
B:KHK102
|
2.8
|
45.3
|
0.5
|
C43
|
B:KHK102
|
2.8
|
48.5
|
0.5
|
C36
|
B:KHK102
|
2.8
|
46.0
|
0.5
|
C16
|
B:KHK102
|
2.8
|
50.3
|
0.5
|
C47
|
B:KHK102
|
2.8
|
45.3
|
0.5
|
C17
|
B:KHK102
|
2.8
|
52.0
|
0.5
|
C43
|
B:KHK102
|
2.8
|
46.0
|
0.5
|
C17
|
B:KHK102
|
2.8
|
50.3
|
0.5
|
C47
|
B:KHK102
|
2.8
|
48.9
|
0.5
|
C16
|
B:KHK102
|
2.8
|
52.0
|
0.5
|
C39
|
B:KHK102
|
3.0
|
47.5
|
0.5
|
C35
|
B:KHK102
|
3.1
|
47.9
|
0.5
|
C21
|
B:KHK102
|
3.1
|
47.0
|
0.5
|
C14
|
B:KHK102
|
3.1
|
47.0
|
0.5
|
C25
|
B:KHK102
|
3.1
|
43.8
|
0.5
|
C21
|
B:KHK102
|
3.1
|
53.1
|
0.5
|
C51
|
B:KHK102
|
3.1
|
43.8
|
0.5
|
C25
|
B:KHK102
|
3.1
|
48.6
|
0.5
|
C39
|
B:KHK102
|
3.1
|
47.7
|
0.5
|
C14
|
B:KHK102
|
3.1
|
53.0
|
0.5
|
C35
|
B:KHK102
|
3.1
|
47.7
|
0.5
|
C51
|
B:KHK102
|
3.1
|
48.5
|
0.5
|
H66
|
B:KHK102
|
3.2
|
57.0
|
0.5
|
H78
|
B:KHK102
|
3.2
|
56.5
|
0.5
|
H56
|
B:KHK102
|
3.2
|
56.4
|
0.5
|
H78
|
B:KHK102
|
3.2
|
63.7
|
0.5
|
H58
|
B:KHK102
|
3.2
|
52.6
|
0.5
|
H65
|
B:KHK102
|
3.2
|
57.5
|
0.5
|
H73
|
B:KHK102
|
3.2
|
52.6
|
0.5
|
H56
|
B:KHK102
|
3.2
|
63.6
|
0.5
|
H66
|
B:KHK102
|
3.2
|
57.2
|
0.5
|
H58
|
B:KHK102
|
3.3
|
58.3
|
0.5
|
H73
|
B:KHK102
|
3.3
|
58.3
|
0.5
|
H65
|
B:KHK102
|
3.3
|
57.3
|
0.5
|
C32
|
B:KHK102
|
4.1
|
49.2
|
0.5
|
C11
|
B:KHK102
|
4.1
|
52.2
|
0.5
|
C29
|
B:KHK102
|
4.1
|
49.8
|
0.5
|
C18
|
B:KHK102
|
4.1
|
52.2
|
0.5
|
C18
|
B:KHK102
|
4.1
|
55.5
|
0.5
|
C29
|
B:KHK102
|
4.1
|
44.7
|
0.5
|
C42
|
B:KHK102
|
4.1
|
49.2
|
0.5
|
C11
|
B:KHK102
|
4.1
|
55.5
|
0.5
|
C32
|
B:KHK102
|
4.2
|
46.9
|
0.5
|
C46
|
B:KHK102
|
4.2
|
44.7
|
0.5
|
C42
|
B:KHK102
|
4.2
|
46.9
|
0.5
|
C46
|
B:KHK102
|
4.2
|
49.8
|
0.5
|
C40
|
B:KHK102
|
4.2
|
48.6
|
0.5
|
C34
|
B:KHK102
|
4.2
|
48.5
|
0.5
|
C26
|
B:KHK102
|
4.3
|
43.6
|
0.5
|
C22
|
B:KHK102
|
4.3
|
47.8
|
0.5
|
C13
|
B:KHK102
|
4.3
|
47.7
|
0.5
|
C26
|
B:KHK102
|
4.3
|
49.5
|
0.5
|
C50
|
B:KHK102
|
4.3
|
43.7
|
0.5
|
C22
|
B:KHK102
|
4.3
|
54.8
|
0.5
|
C40
|
B:KHK102
|
4.3
|
48.1
|
0.5
|
C13
|
B:KHK102
|
4.3
|
54.8
|
0.5
|
C34
|
B:KHK102
|
4.3
|
48.1
|
0.5
|
C50
|
B:KHK102
|
4.3
|
49.6
|
0.5
|
C33
|
B:KHK102
|
4.7
|
49.1
|
0.5
|
C41
|
B:KHK102
|
4.7
|
49.1
|
0.5
|
C27
|
B:KHK102
|
4.7
|
44.2
|
0.5
|
O2
|
A:DC2
|
4.7
|
48.4
|
1.0
|
C27
|
B:KHK102
|
4.7
|
49.8
|
0.5
|
C12
|
B:KHK102
|
4.7
|
49.5
|
0.5
|
C23
|
B:KHK102
|
4.7
|
49.5
|
0.5
|
C49
|
B:KHK102
|
4.7
|
44.2
|
0.5
|
C23
|
B:KHK102
|
4.7
|
55.4
|
0.5
|
C41
|
B:KHK102
|
4.7
|
48.0
|
0.5
|
C33
|
B:KHK102
|
4.7
|
48.1
|
0.5
|
C12
|
B:KHK102
|
4.7
|
55.4
|
0.5
|
C49
|
B:KHK102
|
4.8
|
50.0
|
0.5
|
N2
|
B:DG9
|
4.8
|
54.8
|
1.0
|
O4'
|
A:DC2
|
4.9
|
51.5
|
1.0
|
|
Reference:
K.T.Mcquaid,
J.P.Hall,
C.J.Cardin.
L-[Ru(Phen)2(11-NO2-Dppz)]2+ Bound to the Oligonucleotide Sequence D(Tcggcgccga) To Be Published.
Page generated: Thu Oct 10 13:07:35 2024
|