Atomistry » Ruthenium » PDB 6bo2-8oyr » 6r6d
Atomistry »
  Ruthenium »
    PDB 6bo2-8oyr »
      6r6d »

Ruthenium in PDB 6r6d: [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2

Protein crystallography data

The structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2, PDB code: 6r6d was solved by K.T.Mcquaid, J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.03 / 1.84
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 46.704, 46.704, 34.308, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 18.7

Other elements in 6r6d:

The structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 also contains other interesting chemical elements:

Barium (Ba) 1 atom
Sodium (Na) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 (pdb code 6r6d). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2, PDB code: 6r6d:

Ruthenium binding site 1 out of 1 in 6r6d

Go back to Ruthenium Binding Sites List in 6r6d
Ruthenium binding site 1 out of 1 in the [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru102

b:38.4
occ:1.00
RU A:EQQ102 0.0 38.4 1.0
N17 A:EQQ102 2.0 42.4 1.0
N39 A:EQQ102 2.0 40.5 1.0
N40 A:EQQ102 2.0 38.9 1.0
N26 A:EQQ102 2.0 39.9 1.0
N22 A:EQQ102 2.0 43.1 1.0
N50 A:EQQ102 2.0 36.3 1.0
C38 A:EQQ102 2.8 45.2 1.0
C30 A:EQQ102 2.8 36.9 1.0
C18 A:EQQ102 2.8 41.8 1.0
C49 A:EQQ102 2.8 39.5 1.0
C19 A:EQQ102 2.8 43.6 1.0
C45 A:EQQ102 2.8 39.0 1.0
C16 A:EQQ102 3.0 56.9 1.0
C41 A:EQQ102 3.1 41.6 1.0
C23 A:EQQ102 3.1 48.4 1.0
C37 A:EQQ102 3.1 38.8 1.0
C27 A:EQQ102 3.1 44.9 1.0
C53 A:EQQ102 3.1 41.3 1.0
H5 A:EQQ102 3.2 68.1 1.0
H6 A:EQQ102 3.2 57.9 1.0
H15 A:EQQ102 3.2 49.8 1.0
H9 A:EQQ102 3.2 53.7 1.0
H14 A:EQQ102 3.2 46.4 1.0
H20 A:EQQ102 3.2 49.4 1.0
C13 A:EQQ102 4.1 45.5 1.0
C20 A:EQQ102 4.1 47.9 1.0
C34 A:EQQ102 4.1 43.9 1.0
C31 A:EQQ102 4.1 41.3 1.0
C48 A:EQQ102 4.2 44.2 1.0
C44 A:EQQ102 4.2 37.0 1.0
C15 A:EQQ102 4.2 44.6 1.0
C42 A:EQQ102 4.3 47.8 1.0
C28 A:EQQ102 4.3 48.9 1.0
C24 A:EQQ102 4.3 44.8 1.0
C36 A:EQQ102 4.3 45.5 1.0
C52 A:EQQ102 4.3 47.2 1.0
O2 A:DC2 4.4 45.3 1.0
C14 A:EQQ102 4.7 53.4 1.0
N29 A:EQQ102 4.7 39.5 1.0
N35 A:EQQ102 4.7 37.2 1.0
C25 A:EQQ102 4.7 42.4 1.0
N43 A:EQQ102 4.7 39.9 1.0
N51 A:EQQ102 4.7 42.3 1.0
O4' A:DC2 5.0 46.0 1.0

Reference:

K.T.Mcquaid, J.P.Hall, C.J.Cardin. Structure of [Ru(Tap)2(11,12-CN2-Dppz)]2+ Bound to D(Tcggcgccga)2 To Be Published.
Page generated: Thu Oct 10 13:07:03 2024

Last articles

Ca in 2Y31
Ca in 2Y09
Ca in 2XZV
Ca in 2XZ1
Ca in 2XWG
Ca in 2XXL
Ca in 2XRC
Ca in 2XY8
Ca in 2XTS
Ca in 2XVT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy