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Ruthenium in PDB 6iq4: Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups.

Protein crystallography data

The structure of Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups., PDB code: 6iq4 was solved by L.Defalco, L.K.Batchelor, Z.Adhireksan, P.J.Dyson, C.A.Davey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.85 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 107.307, 109.741, 183.254, 90.00, 90.00, 90.00
R / Rfree (%) 23.2 / 25.7

Other elements in 6iq4:

The structure of Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups. also contains other interesting chemical elements:

Gold (Au) 1 atom
Magnesium (Mg) 4 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups. (pdb code 6iq4). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups., PDB code: 6iq4:

Ruthenium binding site 1 out of 1 in 6iq4

Go back to Ruthenium Binding Sites List in 6iq4
Ruthenium binding site 1 out of 1 in the Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups.


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Nucleosome Core Particle Cross-Linked with A Hetero-Binuclear Molecule Possessing Rapta and Gold(I) 4-(Diphenylphosphino)Benzoic Acid Groups. within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ru201

b:0.9
occ:1.00
RU G:D0X201 0.0 0.9 1.0
OE2 G:GLU64 2.1 0.3 1.0
OE2 G:GLU61 2.1 0.4 1.0
C10 G:D0X201 2.2 0.4 1.0
C9 G:D0X201 2.2 0.2 1.0
C2 G:D0X201 2.2 0.5 1.0
C5 G:D0X201 2.2 0.9 1.0
C3 G:D0X201 2.3 0.9 1.0
C4 G:D0X201 2.3 0.8 1.0
P1 G:D0X201 2.4 0.7 1.0
CD G:GLU61 3.0 91.6 1.0
OE1 G:GLU61 3.2 85.3 1.0
CD G:GLU64 3.3 0.2 1.0
C1 G:D0X201 3.3 0.5 1.0
C6 G:D0X201 3.4 0.1 1.0
C16 G:D0X201 3.5 1.0 1.0
C20 G:D0X201 3.6 0.7 1.0
C18 G:D0X201 3.6 0.2 1.0
OE1 G:GLU64 3.7 0.8 1.0
CG G:GLU61 4.4 87.6 1.0
CG G:GLU64 4.5 0.7 1.0
C7 G:D0X201 4.7 0.9 1.0
N1 G:D0X201 4.8 0.8 1.0
N2 G:D0X201 4.8 0.6 1.0
N3 G:D0X201 4.9 0.1 1.0

Reference:

L.K.Batchelor, L.De Falco, T.Von Erlach, D.Sharma, Z.Adhireksan, U.Roethlisberger, C.A.Davey, P.J.Dyson. Crosslinking Allosteric Sites on the Nucleosome. Angew.Chem.Int.Ed.Engl. V. 58 15660 2019.
ISSN: ESSN 1521-3773
PubMed: 31478581
DOI: 10.1002/ANIE.201906423
Page generated: Wed Dec 16 02:08:51 2020

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