Ruthenium in PDB 5obc: X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole

Enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole

Protein crystallography data

Ruthenium Binding Sites:

Ruthenium binding site 1 out of 3 in 5obc

Ruthenium Binding Sites List in 5obc

Ruthenium binding site 1 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru201 b:54.4 occ:0.60 RU A:RU2201 0.0 54.4 0.6 NE2 A:HIS105 2.2 41.5 1.0 O4 A:RU2201 2.3 50.8 0.6 O3 A:RU2201 2.3 47.1 0.6 O1 A:RU2201 2.3 54.5 0.6 O5 A:RU2201 2.3 51.8 0.6 CE1 A:HIS105 3.0 43.4 1.0 CD2 A:HIS105 3.2 40.7 1.0 O A:HOH328 3.9 63.7 1.0 ND1 A:HIS105 4.2 43.1 1.0 CG A:HIS105 4.3 40.0 1.0 O A:HOH330 4.6 58.2 1.0 O A:HOH354 4.6 57.8 1.0 CG2 A:THR78 4.8 46.1 1.0

Ruthenium binding site 2 out of 3 in 5obc

Ruthenium Binding Sites List in 5obc

Ruthenium binding site 2 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole within 5.0Å range: probe atom residue distance (Å) B Occ B:Ru201 b:52.7 occ:0.40 RU B:9Q8201 0.0 52.7 0.4 NE2 B:HIS105 2.2 32.3 1.0 O5 B:9Q8201 2.3 45.4 0.4 O4 B:9Q8201 2.3 49.6 0.4 O6 B:9Q8201 2.3 46.9 0.4 CE1 B:HIS105 3.1 32.2 1.0 CD2 B:HIS105 3.1 31.6 1.0 O B:HOH393 3.2 39.1 0.6 ND1 B:HIS105 4.2 31.1 1.0 O B:HOH353 4.2 42.1 1.0 CG B:HIS105 4.2 28.4 1.0 CG2 B:THR78 4.6 27.9 1.0

Ruthenium binding site 3 out of 3 in 5obc

Ruthenium Binding Sites List in 5obc

Ruthenium binding site 3 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 3 of X-Ray Structure of the Adduct Formed Upon Reaction of Ribonuclease A with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole within 5.0Å range: probe atom residue distance (Å) B Occ B:Ru202 b:52.8 occ:0.60 RU B:RU2202 0.0 52.8 0.6 C2 B:RU2202 2.1 48.2 1.0 O1 B:RU2202 2.3 37.8 0.6 O3 B:RU2202 2.3 40.6 0.6 O5 B:RU2202 2.4 48.2 0.6 ND1 B:HIS119 2.5 43.7 1.0 O B:HOH367 2.8 13.3 0.4 O2 B:RU2202 3.3 38.8 0.6 CG B:HIS119 3.3 41.3 1.0 CB B:HIS119 3.5 33.2 1.0 CE1 B:HIS119 3.5 43.1 1.0 CA B:HIS119 3.9 27.9 1.0 O B:HOH406 3.9 33.7 0.4 O B:HOH347 4.1 30.9 1.0 O B:VAL118 4.3 25.2 1.0 N B:PHE120 4.5 24.2 1.0 CD2 B:HIS119 4.5 41.3 1.0 NE2 B:HIS119 4.6 41.1 1.0 O B:HOH335 4.7 27.9 1.0 C B:HIS119 4.7 25.2 1.0 N B:HIS119 5.0 25.6 1.0

Reference: