Ruthenium in PDB 5ob7: X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2)

Enzymatic activity of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2)

Protein crystallography data

Other elements in 5ob7:

Ruthenium Binding Sites:

Ruthenium binding site 1 out of 3 in 5ob7

Ruthenium Binding Sites List in 5ob7

Ruthenium binding site 1 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru204 b:44.2 occ:0.80 RU1 A:9QB204 0.0 44.2 0.8 C1 A:9QB204 1.8 39.9 0.8 C2 A:9QB204 1.9 47.3 0.8 C3 A:9QB204 1.9 45.6 0.8 CL1 A:9QB204 2.0 41.4 0.8 NE2 A:HIS15 2.2 44.2 1.0 O4 A:9QB204 2.3 40.4 0.8 O1 A:9QB204 2.9 41.9 0.8 O2 A:9QB204 2.9 44.8 0.8 O3 A:9QB204 3.0 42.5 0.8 CE1 A:HIS15 3.2 49.1 1.0 CD2 A:HIS15 3.2 45.6 1.0 OD1 A:ASP87 4.0 46.0 1.0 ND1 A:HIS15 4.3 43.4 1.0 CG A:HIS15 4.3 43.4 1.0 OG1 A:THR89 5.0 35.5 1.0

Ruthenium binding site 2 out of 3 in 5ob7

Ruthenium Binding Sites List in 5ob7

Ruthenium binding site 2 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru205 b:51.0 occ:0.50 RU A:9Q8205 0.0 51.0 0.5 C1 A:9Q8205 1.9 46.3 0.5 C2 A:9Q8205 2.0 43.3 0.5 OD2 A:ASP18 2.2 46.5 1.0 O6 A:9Q8205 2.4 43.1 0.5 O4 A:9Q8205 2.4 43.7 0.5 O5 A:9Q8205 2.4 44.5 0.5 O1 A:9Q8205 2.9 52.4 0.5 CG A:ASP18 3.0 44.7 1.0 OD1 A:ASP18 3.0 45.5 1.0 O2 A:9Q8205 3.0 37.3 0.5 NZ A:LYS13 3.9 40.2 0.5 NZ A:LYS13 4.0 39.3 0.5 CB A:ASP18 4.4 39.5 1.0 CE A:LYS13 4.9 41.2 0.5

Ruthenium binding site 3 out of 3 in 5ob7

Ruthenium Binding Sites List in 5ob7

Ruthenium binding site 3 out of 3 in the X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 3 of X-Ray Structure of the Adduct Formed Upon Reaction of Lysozyme with the Compound Fac-[Ruii(Co)3CL2(N3-Im), Im=Imidazole (Crystal 2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ru206 b:46.4 occ:0.30 O A:HOH384 2.6 58.3 1.0 NH2 A:ARG125 2.7 61.3 1.0 OD2 A:ASP119 2.7 62.2 1.0 OD1 A:ASP119 2.8 48.6 1.0 CG A:ASP119 3.0 50.3 1.0 OE1 A:GLN121 3.6 58.1 1.0 CZ A:ARG125 3.9 64.2 1.0 CB A:ASP119 4.5 44.6 1.0 NH1 A:ARG125 4.6 67.3 1.0 NE A:ARG125 4.7 56.5 1.0 CD A:GLN121 4.7 56.2 1.0 CB A:GLN121 4.8 43.1 1.0

Reference: