Atomistry » Ruthenium » PDB 5iu5-6bo1 » 5l8d
Atomistry »
  Ruthenium »
    PDB 5iu5-6bo1 »
      5l8d »

Ruthenium in PDB 5l8d: X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL

Protein crystallography data

The structure of X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL, PDB code: 5l8d was solved by S.Menage, C.Cavazza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.80 / 1.80
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 86.303, 93.606, 124.211, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 20.8

Other elements in 5l8d:

The structure of X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 2 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL (pdb code 5l8d). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL, PDB code: 5l8d:

Ruthenium binding site 1 out of 1 in 5l8d

Go back to Ruthenium Binding Sites List in 5l8d
Ruthenium binding site 1 out of 1 in the X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of X-Ray Structure of Nika From Escherichia Coli in Complex with Ru(Bis(Pyrzol-1-Yl)Acetate Scorpionate)(Co)2CL within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ru606

b:28.7
occ:0.90
C B:CMO611 1.8 34.9 1.0
NAL B:6RP608 2.0 30.2 0.9
NAM B:6RP608 2.2 31.4 0.9
OXT B:6RP608 2.2 26.4 0.9
C B:CMO612 2.3 32.5 0.8
CL B:CL607 2.5 42.7 0.9
NAE B:6RP608 2.7 31.2 0.9
N B:6RP608 2.7 28.9 0.9
CA B:6RP608 2.9 26.9 0.9
C B:6RP608 3.0 25.7 0.9
O B:CMO612 3.0 40.0 0.8
O B:CMO611 3.0 43.0 1.0
CAK B:6RP608 3.1 29.0 0.9
CAN B:6RP608 3.3 28.9 0.9
CAD B:6RP608 3.9 28.6 0.9
CAH B:6RP608 4.0 31.8 0.9
CAI B:6RP608 4.1 33.5 0.9
NH2 B:ARG137 4.1 19.8 1.0
O B:HOH951 4.2 46.5 1.0
O B:6RP608 4.2 19.6 0.9
CAJ B:6RP608 4.2 32.7 0.9
SD B:MET27 4.8 34.3 1.0

Reference:

S.Lopez, L.Rondot, C.Cavazza, M.Iannello, E.Boeri-Erba, N.Burzlaff, F.Strinitz, A.Jorge-Robin, C.Marchi-Delapierre, S.Menage. Efficient Conversion of Alkenes to Chlorohydrins By A Ru-Based Artificial Enzyme. Chem. Commun. (Camb.) V. 53 3579 2017.
ISSN: ESSN 1364-548X
PubMed: 28289745
DOI: 10.1039/C6CC08873B
Page generated: Wed Dec 16 02:08:34 2020

Last articles

Zn in 7RRP
Zn in 7OKY
Zn in 7OL0
Zn in 7OKX
Zn in 7ONB
Zn in 7RSF
Zn in 7OUF
Zn in 7OUG
Zn in 7OUH
Zn in 7RGN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy