Atomistry » Ruthenium » PDB 5iu5-6bo1 » 5jq2
Atomistry »
  Ruthenium »
    PDB 5iu5-6bo1 »
      5jq2 »

Ruthenium in PDB 5jq2: Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine

Enzymatic activity of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine

All present enzymatic activity of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine:
1.14.14.1; 1.6.2.4;

Protein crystallography data

The structure of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine, PDB code: 5jq2 was solved by M.Kloos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.54 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.880, 112.540, 156.360, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.8

Other elements in 5jq2:

The structure of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine also contains other interesting chemical elements:

Iron (Fe) 2 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine (pdb code 5jq2). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine, PDB code: 5jq2:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 5jq2

Go back to Ruthenium Binding Sites List in 5jq2
Ruthenium binding site 1 out of 2 in the Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru503

b:30.7
occ:0.80
 RU1 A:RU8503 0.0 30.7 0.8
N33 A:RU8503 2.0 26.4 0.8
N22 A:RU8503 2.0 31.1 0.8
N41 A:RU8503 2.1 31.0 0.8
N34 A:RU8503 2.1 35.6 0.8
N13 A:RU8503 2.1 29.9 0.8
N10 A:RU8503 2.1 28.0 0.8
C28 A:RU8503 2.8 29.5 0.8
C27 A:RU8503 2.8 33.3 0.8
C14 A:RU8503 2.9 29.0 0.8
C40 A:RU8503 2.9 32.4 0.8
C11 A:RU8503 2.9 27.3 0.8
C39 A:RU8503 2.9 34.2 0.8
C45 A:RU8503 3.0 29.3 0.8
C23 A:RU8503 3.0 32.1 0.8
C32 A:RU8503 3.0 29.8 0.8
C35 A:RU8503 3.1 37.3 0.8
C15 A:RU8503 3.1 31.0 0.8
C08 A:RU8503 3.2 26.6 0.8
C29 A:RU8503 4.1 30.4 0.8
C26 A:RU8503 4.1 33.6 0.8
C42 A:RU8503 4.2 31.1 0.8
C21 A:RU8503 4.3 29.6 0.8
C38 A:RU8503 4.3 35.4 0.8
C24 A:RU8503 4.3 34.0 0.8
C44 A:RU8503 4.3 30.0 0.8
C31 A:RU8503 4.3 29.5 0.8
C02 A:RU8503 4.3 25.6 0.8
C17 A:RU8503 4.4 29.3 0.8
C36 A:RU8503 4.4 38.3 0.8
C06 A:RU8503 4.5 24.6 0.8
C25 A:RU8503 4.8 33.3 0.8
C30 A:RU8503 4.8 30.5 0.8
C43 A:RU8503 4.8 29.0 0.8
C19 A:RU8503 4.8 30.6 0.8
C37 A:RU8503 4.9 35.1 0.8
C01 A:RU8503 4.9 24.0 0.8

Ruthenium binding site 2 out of 2 in 5jq2

Go back to Ruthenium Binding Sites List in 5jq2
Ruthenium binding site 2 out of 2 in the Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Crystal Structure of the Ru(Bpy)2PHENA Functionalized P450 BM3 L407C Heme Domain Mutant in Complex with N-Palmitoylglycine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ru503

b:27.6
occ:0.70
 RU1 B:RU8503 0.0 27.6 0.7
N22 B:RU8503 2.1 27.7 0.7
N33 B:RU8503 2.1 27.1 0.7
N34 B:RU8503 2.1 27.9 0.7
N10 B:RU8503 2.1 26.3 0.7
N41 B:RU8503 2.1 28.0 0.7
N13 B:RU8503 2.1 26.3 0.7
C28 B:RU8503 2.8 27.1 0.7
C27 B:RU8503 2.8 27.1 0.7
C40 B:RU8503 2.9 27.7 0.7
C11 B:RU8503 2.9 26.3 0.7
C39 B:RU8503 2.9 27.8 0.7
C14 B:RU8503 2.9 25.4 0.7
C45 B:RU8503 3.1 28.0 0.7
C23 B:RU8503 3.1 28.6 0.7
C32 B:RU8503 3.1 27.6 0.7
C35 B:RU8503 3.1 30.6 0.7
C08 B:RU8503 3.1 29.1 0.7
C15 B:RU8503 3.1 26.9 0.7
C29 B:RU8503 4.2 29.7 0.7
C26 B:RU8503 4.2 27.1 0.7
C42 B:RU8503 4.2 29.5 0.7
C38 B:RU8503 4.2 29.5 0.7
C02 B:RU8503 4.3 25.6 0.7
C44 B:RU8503 4.3 27.5 0.7
C21 B:RU8503 4.3 25.3 0.7
C31 B:RU8503 4.3 28.8 0.7
C24 B:RU8503 4.4 27.2 0.7
C36 B:RU8503 4.4 29.8 0.7
C06 B:RU8503 4.4 26.7 0.7
C17 B:RU8503 4.4 25.2 0.7
C30 B:RU8503 4.8 27.5 0.7
C25 B:RU8503 4.8 27.1 0.7
C43 B:RU8503 4.8 29.5 0.7
C37 B:RU8503 4.8 28.6 0.7
C01 B:RU8503 4.9 25.1 0.7
C19 B:RU8503 4.9 24.5 0.7

Reference:

J.Spradlin, D.Lee, S.Mahadevan, M.Mahomed, L.Tang, Q.Lam, A.Colbert, O.S.Shafaat, D.Goodin, M.Kloos, M.Kato, L.E.Cheruzel. Insights Into An Efficient Light-Driven Hybrid P450 BM3 Enzyme From Crystallographic, Spectroscopic and Biochemical Studies. Biochim.Biophys.Acta V.1864 1732 2016.
ISSN: ISSN 0006-3002
PubMed: 27639964
DOI: 10.1016/J.BBAPAP.2016.09.005
Page generated: Wed Dec 16 02:08:35 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy