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Ruthenium in PDB 5iwj: Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg

Protein crystallography data

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg, PDB code: 5iwj was solved by J.E.Souter, J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.00 / 1.88
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 46.783, 46.783, 34.948, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 27.7

Other elements in 5iwj:

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg also contains other interesting chemical elements:

Barium (Ba) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg (pdb code 5iwj). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg, PDB code: 5iwj:

Ruthenium binding site 1 out of 1 in 5iwj

Go back to Ruthenium Binding Sites List in 5iwj
Ruthenium binding site 1 out of 1 in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Ccgggcccgg within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ru102

b:43.2
occ:1.00
RU C:RKL102 0.0 43.2 1.0
N9 C:RKL102 2.0 42.2 1.0
N1 C:RKL102 2.1 43.9 1.0
N2 C:RKL102 2.1 44.6 1.0
N12 C:RKL102 2.1 42.4 1.0
N8 C:RKL102 2.1 41.6 1.0
N5 C:RKL102 2.1 44.2 1.0
C29 C:RKL102 2.7 44.2 1.0
C36 C:RKL102 2.8 43.9 1.0
C10 C:RKL102 2.8 44.3 1.0
C1 C:RKL102 2.8 44.8 1.0
C26 C:RKL102 2.8 42.1 1.0
C19 C:RKL102 2.8 41.9 1.0
C30 C:RKL102 3.1 44.4 1.0
C2 C:RKL102 3.1 44.9 1.0
C12 C:RKL102 3.1 44.2 1.0
C28 C:RKL102 3.1 41.8 1.0
C38 C:RKL102 3.2 45.1 1.0
C20 C:RKL102 3.2 43.9 1.0
C32 C:RKL102 4.1 42.3 1.0
C35 C:RKL102 4.1 44.7 1.0
C25 C:RKL102 4.2 41.8 1.0
C8 C:RKL102 4.2 45.8 1.0
C5 C:RKL102 4.2 44.9 1.0
C22 C:RKL102 4.2 44.1 1.0
C31 C:RKL102 4.3 44.3 1.0
C3 C:RKL102 4.4 45.1 1.0
C11 C:RKL102 4.4 44.6 1.0
C27 C:RKL102 4.4 40.0 1.0
C37 C:RKL102 4.4 46.5 1.0
C21 C:RKL102 4.4 45.0 1.0
N10 C:RKL102 4.7 44.8 1.0
N7 C:RKL102 4.8 40.1 1.0
C4 C:RKL102 4.8 44.3 1.0
N11 C:RKL102 4.8 42.7 1.0
C9 C:RKL102 4.8 45.1 1.0
N2 C:DG9 4.8 45.8 1.0
N6 C:RKL102 4.8 44.4 1.0

Reference:

J.E.Souter, J.P.Hall, S.P.Gurung, J.A.Brazier, C.J.Cardin. The Binding Specificity of RUTAP2DPPZ To Be Published.
Page generated: Wed Dec 16 02:08:33 2020

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