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Ruthenium in PDB 5giy: Hsa-Palmitic Acid-[RUCL5(Ind)]2-

Protein crystallography data

The structure of Hsa-Palmitic Acid-[RUCL5(Ind)]2-, PDB code: 5giy was solved by F.Yang, T.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.43 / 2.54
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 185.845, 38.710, 96.070, 90.00, 105.12, 90.00
R / Rfree (%) 22.4 / 27.9

Other elements in 5giy:

The structure of Hsa-Palmitic Acid-[RUCL5(Ind)]2- also contains other interesting chemical elements:

Chlorine (Cl) 7 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Hsa-Palmitic Acid-[RUCL5(Ind)]2- (pdb code 5giy). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Hsa-Palmitic Acid-[RUCL5(Ind)]2-, PDB code: 5giy:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 5giy

Go back to Ruthenium Binding Sites List in 5giy
Ruthenium binding site 1 out of 2 in the Hsa-Palmitic Acid-[RUCL5(Ind)]2-


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Hsa-Palmitic Acid-[RUCL5(Ind)]2- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru1007

b:0.0
occ:1.00
RU2 A:7GE1007 0.0 0.0 1.0
NE2 A:HIS146 1.8 0.6 1.0
N06 A:7GE1007 2.1 93.2 1.0
CE1 A:HIS146 2.4 97.8 1.0
C07 A:7GE1007 2.5 96.2 1.0
N14 A:7GE1007 2.6 97.5 1.0
CL4 A:7GE1007 2.7 0.4 1.0
CL1 A:7GE1007 2.7 0.9 1.0
CL5 A:7GE1007 2.7 0.4 1.0
CL3 A:7GE1007 2.7 0.2 1.0
CD2 A:HIS146 3.1 0.6 1.0
ND1 A:HIS146 3.6 82.6 1.0
C08 A:7GE1007 3.7 96.6 1.0
C13 A:7GE1007 3.8 99.0 1.0
CG A:HIS146 4.0 77.7 1.0
CG A:LYS190 4.2 89.2 1.0
CD A:LYS190 4.3 94.9 1.0

Ruthenium binding site 2 out of 2 in 5giy

Go back to Ruthenium Binding Sites List in 5giy
Ruthenium binding site 2 out of 2 in the Hsa-Palmitic Acid-[RUCL5(Ind)]2-


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Hsa-Palmitic Acid-[RUCL5(Ind)]2- within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru1008

b:0.7
occ:1.00
RU2 A:7GE1008 0.0 0.7 1.0
N06 A:7GE1008 2.3 0.6 1.0
CL4 A:7GE1008 2.7 0.4 1.0
CL1 A:7GE1008 2.7 0.4 1.0
CL3 A:7GE1008 2.7 0.1 1.0
H2 A:7GE1008 2.8 0.8 1.0
N14 A:7GE1008 2.9 0.2 1.0
C07 A:7GE1008 2.9 0.0 1.0
NE2 A:HIS242 3.0 93.5 1.0
NZ A:LYS199 3.1 0.6 1.0
H1 A:7GE1008 3.3 0.1 1.0
CE1 A:HIS242 3.6 94.5 1.0
C13 A:7GE1008 4.0 0.6 1.0
C08 A:7GE1008 4.0 0.1 1.0
CE A:LYS199 4.2 0.3 1.0
CD2 A:HIS242 4.2 96.8 1.0
ND1 A:HIS242 4.8 99.5 1.0
O A:HOH1109 5.0 88.3 1.0

Reference:

F.Yang, T.Wang. Structure of Hsa-Palmitic Acid-[RUCL5(Ind)]2- To Be Published.
Page generated: Wed Dec 16 02:08:29 2020

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