Atomistry » Ruthenium » PDB 4l55-5ira » 5et2
Atomistry »
  Ruthenium »
    PDB 4l55-5ira »
      5et2 »

Ruthenium in PDB 5et2: Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa)

Protein crystallography data

The structure of Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa), PDB code: 5et2 was solved by J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.83 / 1.39
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.380, 42.380, 39.300, 90.00, 90.00, 90.00
R / Rfree (%) 16.6 / 18.5

Other elements in 5et2:

The structure of Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa) also contains other interesting chemical elements:

Barium (Ba) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa) (pdb code 5et2). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa), PDB code: 5et2:

Ruthenium binding site 1 out of 1 in 5et2

Go back to Ruthenium Binding Sites List in 5et2
Ruthenium binding site 1 out of 1 in the Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Lambda-Ru(Tap)2(Dppz)]2+ Bound to D(Ttggcgccaa) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru101

b:15.4
occ:1.00
RU A:RKL101 0.0 15.4 1.0
N5 A:RKL101 2.1 14.9 1.0
N12 A:RKL101 2.1 17.1 1.0
N2 A:RKL101 2.1 14.0 1.0
N9 A:RKL101 2.1 17.5 1.0
N8 A:RKL101 2.1 13.9 1.0
N1 A:RKL101 2.1 15.7 1.0
C29 A:RKL101 2.8 18.1 1.0
C36 A:RKL101 2.8 17.9 1.0
C26 A:RKL101 2.8 13.0 1.0
C19 A:RKL101 2.8 13.9 1.0
C1 A:RKL101 2.8 15.0 1.0
C10 A:RKL101 2.8 15.3 1.0
C12 A:RKL101 3.1 15.8 1.0
C2 A:RKL101 3.1 14.7 1.0
C20 A:RKL101 3.1 14.3 1.0
C38 A:RKL101 3.1 17.5 1.0
C28 A:RKL101 3.1 14.4 1.0
C30 A:RKL101 3.2 18.1 1.0
H12 A:RKL101 3.2 16.7 1.0
H2 A:RKL101 3.2 19.6 1.0
H20 A:RKL101 3.3 14.8 1.0
H28 A:RKL101 3.3 14.7 1.0
H38 A:RKL101 3.3 18.0 1.0
H30 A:RKL101 3.4 18.4 1.0
C32 A:RKL101 4.1 18.7 1.0
C35 A:RKL101 4.1 18.2 1.0
C25 A:RKL101 4.2 12.6 1.0
C22 A:RKL101 4.2 14.2 1.0
C5 A:RKL101 4.2 15.6 1.0
C8 A:RKL101 4.2 16.5 1.0
O A:HOH236 4.3 19.4 1.0
C21 A:RKL101 4.3 14.9 1.0
C31 A:RKL101 4.4 18.4 1.0
C11 A:RKL101 4.4 17.1 1.0
C3 A:RKL101 4.4 15.6 1.0
C37 A:RKL101 4.4 18.0 1.0
C27 A:RKL101 4.4 15.2 1.0
O2 A:DT2 4.7 16.0 1.0
O A:HOH246 4.7 22.6 0.5
N10 A:RKL101 4.7 18.5 1.0
N11 A:RKL101 4.8 18.3 1.0
N6 A:RKL101 4.8 14.4 1.0
N7 A:RKL101 4.8 13.9 1.0
C4 A:RKL101 4.8 15.9 1.0
C9 A:RKL101 4.8 16.4 1.0

Reference:

P.M.Keane, J.P.Hall, F.E.Poynton, B.C.Poulsen, S.P.Gurung, I.P.Clark, I.V.Sazanovich, M.Towrie, T.Gunnlaugsson, S.J.Quinn, C.J.Cardin, J.M.Kelly. Inosine Can Increase Dna'S Susceptibility to Photo-Oxidation By A Ru(II) Complex Due to Structural Change in the Minor Groove. Chemistry V. 23 10344 2017.
ISSN: ISSN 1521-3765
PubMed: 28543779
DOI: 10.1002/CHEM.201701447
Page generated: Thu Oct 10 12:58:27 2024

Last articles

Ca in 2W86
Ca in 2W7P
Ca in 2W7O
Ca in 2W67
Ca in 2W68
Ca in 2W4Z
Ca in 2W4Y
Ca in 2W66
Ca in 2W4X
Ca in 2W3O
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy