Atomistry » Ruthenium » PDB 4l55-5ira » 5e9r
Atomistry »
  Ruthenium »
    PDB 4l55-5ira »
      5e9r »

Ruthenium in PDB 5e9r: X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole

Enzymatic activity of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole

All present enzymatic activity of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole:
3.2.1.17;

Protein crystallography data

The structure of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole, PDB code: 5e9r was solved by A.Merlino, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.50 / 2.25
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.500, 78.500, 36.309, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 23.7

Other elements in 5e9r:

The structure of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole (pdb code 5e9r). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole, PDB code: 5e9r:

Ruthenium binding site 1 out of 1 in 5e9r

Go back to Ruthenium Binding Sites List in 5e9r
Ruthenium binding site 1 out of 1 in the X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of X-Ray Structure of the Complex Between Lysozyme and the Compound Fac, Cis-[Ruii(Co)3CL2(N3-Mbi), Mbi=N-Methyl-Benzimidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru201

b:46.2
occ:0.80
 RU1 A:5LN201 0.0 46.2 0.8
C1 A:5LN201 1.9 41.9 0.4
C2 A:5LN201 1.9 38.8 0.8
O2 A:5LN201 2.2 44.8 0.8
O1 A:5LN201 2.3 35.5 0.8
NE2 A:HIS15 2.3 40.4 1.0
CL1 A:5LN201 2.4 47.2 0.8
OC1 A:5LN201 2.9 41.3 0.4
OC2 A:5LN201 3.0 36.3 0.8
CE1 A:HIS15 3.2 39.5 1.0
C A:CMO202 3.3 35.4 0.4
CD2 A:HIS15 3.4 40.0 1.0
O A:CMO202 3.9 36.2 0.4
OD1 A:ASP87 4.2 45.8 1.0
ND1 A:HIS15 4.4 38.5 1.0
CG A:HIS15 4.5 38.3 1.0
CG A:ARG14 4.6 50.4 1.0
OG1 A:THR89 4.9 35.1 1.0

Reference:

A.Merlino, A.Merlino. N/A N/A.
Page generated: Thu Oct 10 12:58:02 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy