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Ruthenium in PDB 4re7: Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga)

Protein crystallography data

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga), PDB code: 4re7 was solved by J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.82 / 2.18
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.830, 47.830, 32.110, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24.2

Other elements in 4re7:

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga) also contains other interesting chemical elements:

Barium (Ba) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga) (pdb code 4re7). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga), PDB code: 4re7:

Ruthenium binding site 1 out of 1 in 4re7

Go back to Ruthenium Binding Sites List in 4re7
Ruthenium binding site 1 out of 1 in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcigcgccga) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru102

b:61.0
occ:1.00
RU A:RKL102 0.0 61.0 1.0
N8 A:RKL102 1.9 50.7 1.0
N9 A:RKL102 2.0 52.2 1.0
N12 A:RKL102 2.0 49.3 1.0
N1 A:RKL102 2.0 67.5 1.0
N2 A:RKL102 2.1 69.8 1.0
N5 A:RKL102 2.1 61.2 1.0
C26 A:RKL102 2.7 56.5 1.0
C29 A:RKL102 2.8 51.3 1.0
C36 A:RKL102 2.8 49.3 1.0
C19 A:RKL102 2.8 58.9 1.0
C10 A:RKL102 2.8 69.9 1.0
C1 A:RKL102 2.8 64.4 1.0
C28 A:RKL102 2.9 59.5 1.0
C30 A:RKL102 3.0 68.0 1.0
C38 A:RKL102 3.0 78.2 1.0
C2 A:RKL102 3.0 76.8 1.0
C12 A:RKL102 3.0 83.8 1.0
C20 A:RKL102 3.1 72.4 1.0
C25 A:RKL102 4.1 49.8 1.0
C32 A:RKL102 4.1 48.6 1.0
C35 A:RKL102 4.1 61.9 1.0
C27 A:RKL102 4.2 68.0 1.0
C22 A:RKL102 4.2 51.9 1.0
C5 A:RKL102 4.2 74.6 1.0
C8 A:RKL102 4.2 73.2 1.0
C31 A:RKL102 4.3 51.2 1.0
C37 A:RKL102 4.3 69.1 1.0
C3 A:RKL102 4.3 64.0 1.0
C11 A:RKL102 4.3 81.0 1.0
C21 A:RKL102 4.3 52.9 1.0
N7 A:RKL102 4.6 61.2 1.0
N10 A:RKL102 4.7 48.7 1.0
N11 A:RKL102 4.7 52.3 1.0
N6 A:RKL102 4.8 58.7 1.0
C4 A:RKL102 4.8 66.8 1.0
C9 A:RKL102 4.8 76.0 1.0

Reference:

J.P.Hall, S.P.Gurung, H.Beer, K.Buchner, D.J.Cardin, J.A.Brazier, C.J.Cardin. The Effects of Dna Modification on the Binding of Polypyridyl Ruthenium Complexes To Be Published.
Page generated: Wed Dec 16 02:08:21 2020

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