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Ruthenium in PDB 4qio: Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution

Protein crystallography data

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution, PDB code: 4qio was solved by S.P.Gurung, J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.83 / 0.95
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.160, 42.160, 39.650, 90.00, 90.00, 90.00
R / Rfree (%) 9.5 / 11.9

Other elements in 4qio:

The structure of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution also contains other interesting chemical elements:

Barium (Ba) 1 atom
Chlorine (Cl) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution (pdb code 4qio). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution, PDB code: 4qio:

Ruthenium binding site 1 out of 1 in 4qio

Go back to Ruthenium Binding Sites List in 4qio
Ruthenium binding site 1 out of 1 in the Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Lambda-[Ru(Tap)2(Dppz)]2+ Bound to D(Tcggcgccia) at High Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru102

b:9.1
occ:1.00
RU A:RKL102 0.0 9.1 1.0
N12 A:RKL102 2.0 10.4 1.0
N8 A:RKL102 2.0 8.7 1.0
N2 A:RKL102 2.1 9.6 1.0
N5 A:RKL102 2.1 8.8 1.0
N1 A:RKL102 2.1 9.3 1.0
N9 A:RKL102 2.1 9.8 1.0
C36 A:RKL102 2.8 11.2 1.0
C19 A:RKL102 2.9 8.5 1.0
C26 A:RKL102 2.9 8.3 1.0
C29 A:RKL102 2.9 11.5 1.0
C10 A:RKL102 2.9 9.6 1.0
C1 A:RKL102 2.9 9.5 1.0
C2 A:RKL102 3.1 10.6 1.0
C28 A:RKL102 3.1 9.2 1.0
C12 A:RKL102 3.1 10.2 1.0
C20 A:RKL102 3.1 9.3 1.0
C38 A:RKL102 3.1 11.4 1.0
C30 A:RKL102 3.1 10.2 1.0
H2 A:RKL102 3.2 10.5 1.0
H12 A:RKL102 3.2 10.2 1.0
H28 A:RKL102 3.2 9.2 1.0
H20 A:RKL102 3.3 9.5 1.0
H30 A:RKL102 3.3 10.4 1.0
H38 A:RKL102 3.3 11.9 1.0
C25 A:RKL102 4.2 8.2 1.0
C22 A:RKL102 4.2 8.4 1.0
C35 A:RKL102 4.2 12.4 1.0
C5 A:RKL102 4.3 10.4 1.0
C8 A:RKL102 4.3 10.1 1.0
C32 A:RKL102 4.3 12.2 1.0
C27 A:RKL102 4.3 9.4 1.0
C3 A:RKL102 4.4 11.4 1.0
C11 A:RKL102 4.4 10.5 1.0
H2 A:DI9 4.4 12.6 0.5
C21 A:RKL102 4.4 9.2 1.0
C37 A:RKL102 4.4 13.6 1.0
H2 A:DI9 4.4 10.8 0.5
C31 A:RKL102 4.4 11.6 1.0
C9 A:RKL102 4.8 11.2 1.0
C4 A:RKL102 4.8 11.3 1.0
N11 A:RKL102 4.9 13.4 1.0
N7 A:RKL102 4.9 9.0 1.0
N6 A:RKL102 4.9 9.3 1.0
N10 A:RKL102 4.9 12.8 1.0

Reference:

P.M.Keane, J.P.Hall, F.E.Poynton, B.C.Poulsen, S.P.Gurung, I.P.Clark, I.V.Sazanovich, M.Towrie, T.Gunnlaugsson, S.J.Quinn, C.J.Cardin, J.M.Kelly. Inosine Can Increase Dna'S Susceptibility to Photo-Oxidation By A Ru(II) Complex Due to Structural Change in the Minor Groove. Chemistry 2017.
ISSN: ISSN 1521-3765
PubMed: 28543779
DOI: 10.1002/CHEM.201701447
Page generated: Wed Dec 16 02:08:21 2020

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