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Ruthenium in PDB 4ms5: Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg

Protein crystallography data

The structure of Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg, PDB code: 4ms5 was solved by J.P.Hall, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.01 / 2.23
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.610, 47.610, 34.600, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24.5

Other elements in 4ms5:

The structure of Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg also contains other interesting chemical elements:

Fluorine (F) 2 atoms
Barium (Ba) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg (pdb code 4ms5). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg, PDB code: 4ms5:

Ruthenium binding site 1 out of 1 in 4ms5

Go back to Ruthenium Binding Sites List in 4ms5
Ruthenium binding site 1 out of 1 in the Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Lambda-[Ru(Tap)2(Dppz-11,12-(F)2)]2+ Bound to Ccggatccgg within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru102

b:31.8
occ:1.00
RU A:RKF102 0.0 31.8 1.0
N12 A:RKF102 1.8 26.6 1.0
N1 A:RKF102 1.8 27.4 1.0
N9 A:RKF102 1.8 26.6 1.0
N8 A:RKF102 1.8 27.5 1.0
N5 A:RKF102 1.8 29.9 1.0
N2 A:RKF102 1.8 28.6 1.0
C36 A:RKF102 2.6 28.2 1.0
C10 A:RKF102 2.6 28.9 1.0
C29 A:RKF102 2.6 27.3 1.0
C26 A:RKF102 2.6 31.5 1.0
C1 A:RKF102 2.6 29.2 1.0
C19 A:RKF102 2.6 31.3 1.0
C12 A:RKF102 2.9 30.6 1.0
C38 A:RKF102 2.9 31.9 1.0
C30 A:RKF102 2.9 29.8 1.0
C28 A:RKF102 2.9 30.6 1.0
C20 A:RKF102 2.9 36.3 1.0
C2 A:RKF102 2.9 31.0 1.0
C35 A:RKF102 3.9 26.9 1.0
C32 A:RKF102 3.9 26.0 1.0
C8 A:RKF102 4.0 28.0 1.0
C25 A:RKF102 4.0 28.8 1.0
C5 A:RKF102 4.0 28.0 1.0
C22 A:RKF102 4.0 31.2 1.0
C37 A:RKF102 4.1 28.0 1.0
C11 A:RKF102 4.1 27.1 1.0
C31 A:RKF102 4.1 27.7 1.0
C27 A:RKF102 4.1 25.7 1.0
C3 A:RKF102 4.2 26.4 1.0
C21 A:RKF102 4.2 33.0 1.0
N11 A:RKF102 4.5 26.5 1.0
N7 A:RKF102 4.5 29.8 1.0
C9 A:RKF102 4.6 28.0 1.0
N10 A:RKF102 4.6 28.1 1.0
C4 A:RKF102 4.6 26.7 1.0
N6 A:RKF102 4.6 31.0 1.0
C34 A:RKF102 4.9 26.6 1.0
C33 A:RKF102 4.9 26.4 1.0
O A:HOH205 4.9 32.4 1.0
N2 A:DG9 5.0 36.9 1.0
C7 A:RKF102 5.0 29.1 1.0
C24 A:RKF102 5.0 27.8 1.0
C6 A:RKF102 5.0 29.3 1.0
C23 A:RKF102 5.0 29.6 1.0

Reference:

J.P.Hall, K.O'sullivan, J.M.Kelly, C.J.Cardin. The Effects of Disubstitution on the Binding of Ruthenium Complexes to Dna To Be Published.
Page generated: Wed Dec 16 02:08:21 2020

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