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Ruthenium in PDB 4i60: Crystal Structure of Avidin - Biotinylruthenocene Complex

Protein crystallography data

The structure of Crystal Structure of Avidin - Biotinylruthenocene Complex, PDB code: 4i60 was solved by P.Strzelczyk, A.Bujacz, G.Bujacz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.30 / 2.50
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 60.220, 60.220, 62.470, 90.00, 90.00, 90.00
R / Rfree (%) 16.5 / 21.1

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Crystal Structure of Avidin - Biotinylruthenocene Complex (pdb code 4i60). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Crystal Structure of Avidin - Biotinylruthenocene Complex, PDB code: 4i60:

Ruthenium binding site 1 out of 1 in 4i60

Go back to Ruthenium Binding Sites List in 4i60
Ruthenium binding site 1 out of 1 in the Crystal Structure of Avidin - Biotinylruthenocene Complex


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Crystal Structure of Avidin - Biotinylruthenocene Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru203

b:51.7
occ:1.00
RU1 A:B1R203 0.0 51.7 1.0
C19 A:B1R203 2.1 43.6 1.0
C21 A:B1R203 2.1 41.9 1.0
C22 A:B1R203 2.1 43.1 1.0
C20 A:B1R203 2.1 43.4 1.0
C23 A:B1R203 2.1 45.0 1.0
C14 A:B1R203 2.1 44.3 1.0
C16 A:B1R203 2.1 43.1 1.0
C15 A:B1R203 2.1 43.5 1.0
C18 A:B1R203 2.1 42.3 1.0
C17 A:B1R203 2.2 41.5 1.0
C11 A:B1R203 3.1 35.0 1.0
O12 A:B1R203 3.3 34.3 1.0
C10 A:B1R203 4.4 32.0 1.0
OG A:SER101 4.5 23.3 1.0
OG1 A:THR40 4.7 55.6 1.0
CB A:ALA39 4.7 40.9 1.0
NH1 A:ARG114 4.7 34.8 1.0
N A:ALA39 4.9 38.6 1.0
CD2 A:LEU99 5.0 19.0 1.0
OG A:SER75 5.0 26.6 1.0

Reference:

P.Strzelczyk, A.Bujacz, D.Plazuk, J.Zakrzewski, G.Bujacz. Structural Investigation of the Interactions of Biotinylruthenocene with Avidin. Chem.Biol.Interact V. 204 6 2013.
ISSN: ISSN 0009-2797
PubMed: 23603015
DOI: 10.1016/J.CBI.2013.04.005
Page generated: Wed Dec 16 02:08:12 2020

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