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Ruthenium in PDB 4hhg: Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109

Protein crystallography data

The structure of Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109, PDB code: 4hhg was solved by N.Herrera, J.J.Warren, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.59 / 1.60
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 49.762, 67.176, 81.385, 90.00, 90.00, 90.00
R / Rfree (%) 23.4 / 26.1

Other elements in 4hhg:

The structure of Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109 also contains other interesting chemical elements:

Copper (Cu) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109 (pdb code 4hhg). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109, PDB code: 4hhg:

Ruthenium binding site 1 out of 1 in 4hhg

Go back to Ruthenium Binding Sites List in 4hhg
Ruthenium binding site 1 out of 1 in the Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Crystal Structure of the Pseudomonas Aeruginosa Azurin, RUH107NO YOH109 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru202

b:11.1
occ:0.50
RU A:DRU202 0.0 11.1 0.5
N13 A:DRU202 1.8 15.9 0.5
N2 A:DRU202 1.8 15.4 0.5
N26 A:DRU202 1.8 16.6 0.5
N37 A:DRU202 1.8 14.7 0.5
ND1 A:DRU202 1.8 14.0 0.5
NE2 A:HIS107 2.1 25.5 1.0
C8 A:DRU202 2.6 17.5 0.5
C7 A:DRU202 2.6 15.6 0.5
C32 A:DRU202 2.7 16.2 0.5
C31 A:DRU202 2.7 17.6 0.5
C27 A:DRU202 2.8 18.7 0.5
C12 A:DRU202 2.8 16.8 0.5
C3 A:DRU202 2.8 14.1 0.5
CE1 A:DRU202 2.8 13.6 0.5
C36 A:DRU202 2.9 16.0 0.5
CG A:DRU202 3.0 13.7 0.5
CE1 A:HIS107 3.0 27.1 1.0
CD2 A:HIS107 3.1 28.5 1.0
C9 A:DRU202 3.9 18.8 0.5
C6 A:DRU202 4.0 15.2 0.5
NE2 A:DRU202 4.0 18.7 0.5
C11 A:DRU202 4.0 19.6 0.5
C33 A:DRU202 4.1 17.8 0.5
C30 A:DRU202 4.1 19.5 0.5
CD2 A:DRU202 4.1 16.2 0.5
C28 A:DRU202 4.1 19.4 0.5
C4 A:DRU202 4.1 15.3 0.5
C35 A:DRU202 4.2 15.4 0.5
ND1 A:HIS107 4.2 23.3 1.0
CG A:HIS107 4.3 25.7 1.0
C10 A:DRU202 4.5 20.5 0.5
C5 A:DRU202 4.6 15.9 0.5
C29 A:DRU202 4.6 18.2 0.5
C34 A:DRU202 4.6 15.5 0.5
NZ A:LYS128 5.0 49.1 1.0

Reference:

J.J.Warren, N.Herrera, M.G.Hill, J.R.Winkler, H.B.Gray. Electron Flow Through Nitrotyrosinate in Pseudomonas Aeruginosa Azurin. J.Am.Chem.Soc. V. 135 11151 2013.
ISSN: ISSN 0002-7863
PubMed: 23859602
DOI: 10.1021/JA403734N
Page generated: Wed Dec 16 02:08:12 2020

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