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Ruthenium in PDB 3w6a: Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2

Enzymatic activity of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2

All present enzymatic activity of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2, PDB code: 3w6a was solved by H.Tabe, S.Abe, T.Hikage, S.Kitagawa, T.Ueno, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.95 / 1.77
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.046, 79.046, 36.358, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 27.2

Other elements in 3w6a:

The structure of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Sodium (Na) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 (pdb code 3w6a). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2, PDB code: 3w6a:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 3w6a

Go back to Ruthenium Binding Sites List in 3w6a
Ruthenium binding site 1 out of 2 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru207

b:47.8
occ:0.60
RU1 A:RBN207 0.0 47.8 0.6
C2 A:RBN207 2.2 49.9 0.6
C3 A:RBN207 2.2 49.4 0.6
C1 A:RBN207 2.2 46.8 0.6
C6 A:RBN207 2.2 48.3 0.6
C5 A:RBN207 2.2 50.5 0.6
C4 A:RBN207 2.2 48.1 0.6
CL1 A:RBN207 2.4 48.3 0.6
NE2 A:HIS15 2.4 42.2 1.0
CL2 A:RBN207 2.4 55.7 0.6
CD2 A:HIS15 3.4 39.3 1.0
CE1 A:HIS15 3.4 45.4 1.0
ND1 A:HIS15 4.5 42.0 1.0
O A:HOH343 4.5 40.8 1.0
CG A:HIS15 4.5 37.2 1.0
O A:HOH366 4.8 45.6 1.0
OD1 A:ASP87 4.8 35.1 1.0
OG1 A:THR89 4.9 35.6 1.0

Ruthenium binding site 2 out of 2 in 3w6a

Go back to Ruthenium Binding Sites List in 3w6a
Ruthenium binding site 2 out of 2 in the Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Crystal Structure of Cross-Linked Tetragonal Hen Egg White Lysozyme Soaked Wiht 5MM [Ru(Benzene)CL2]2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru208

b:30.0
occ:0.20
OD2 A:ASP101 2.3 44.9 1.0
CG A:ASP101 3.4 42.7 1.0
OD1 A:ASP101 3.8 40.2 1.0
O A:HOH353 4.6 45.2 1.0
CB A:ASP101 4.7 33.1 1.0

Reference:

T.Ueno, H.Tabe, S.Abe, T.Hikage, S.Kitagawa. Solid Artificial Metalloenzymes: Post-Engineering of Porous Protein Crystals By Organometallic Complexes To Be Published.
Page generated: Wed Dec 16 02:08:09 2020

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