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Ruthenium in PDB 3m0b: Ru-Porphyrin Protein Scaffolds For Sensing O2

Protein crystallography data

The structure of Ru-Porphyrin Protein Scaffolds For Sensing O2, PDB code: 3m0b was solved by M.B.Winter, E.J.Mclaurin, S.Y.Reece, C.Olea Jr., D.G.Nocera, M.A.Marletta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.35 / 2.00
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 61.183, 61.183, 245.116, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 22.5

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Ru-Porphyrin Protein Scaffolds For Sensing O2 (pdb code 3m0b). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Ru-Porphyrin Protein Scaffolds For Sensing O2, PDB code: 3m0b:

Ruthenium binding site 1 out of 1 in 3m0b

Go back to Ruthenium Binding Sites List in 3m0b
Ruthenium binding site 1 out of 1 in the Ru-Porphyrin Protein Scaffolds For Sensing O2


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Ru-Porphyrin Protein Scaffolds For Sensing O2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru200

b:31.2
occ:1.00
RU A:RUR200 0.0 31.2 1.0
C A:CMO500 1.6 33.1 1.0
NE2 A:HIS102 2.1 35.2 1.0
ND A:RUR200 2.3 31.9 1.0
NC A:RUR200 2.3 28.9 1.0
NB A:RUR200 2.3 30.6 1.0
NA A:RUR200 2.3 28.4 1.0
O A:CMO500 2.8 30.6 1.0
CE1 A:HIS102 3.0 36.8 1.0
C1A A:RUR200 3.1 30.2 1.0
C4C A:RUR200 3.1 35.9 1.0
C1D A:RUR200 3.1 37.1 1.0
C4B A:RUR200 3.1 33.3 1.0
C4D A:RUR200 3.1 37.3 1.0
C1C A:RUR200 3.1 34.2 1.0
C4A A:RUR200 3.2 26.7 1.0
C1B A:RUR200 3.2 32.8 1.0
CD2 A:HIS102 3.2 36.1 1.0
CHA A:RUR200 3.4 28.9 1.0
CHD A:RUR200 3.4 32.7 1.0
CHC A:RUR200 3.4 29.4 1.0
CHB A:RUR200 3.5 28.5 1.0
ND1 A:HIS102 4.2 35.1 1.0
C2A A:RUR200 4.3 29.8 1.0
C3A A:RUR200 4.3 30.6 1.0
CG A:HIS102 4.3 30.3 1.0
C3C A:RUR200 4.3 31.0 1.0
C2C A:RUR200 4.3 34.2 1.0
C3B A:RUR200 4.3 30.9 1.0
C2D A:RUR200 4.3 33.6 1.0
C3D A:RUR200 4.4 35.0 1.0
C2B A:RUR200 4.4 33.1 1.0
CE2 A:PHE78 4.7 41.4 1.0
CD1 A:LEU144 4.9 28.2 1.0

Reference:

M.B.Winter, E.J.Mclaurin, S.Y.Reece, C.Olea, D.G.Nocera, M.A.Marletta. Ru-Porphyrin Protein Scaffolds For Sensing O2. J.Am.Chem.Soc. V. 132 5582 2010.
ISSN: ISSN 0002-7863
PubMed: 20373741
DOI: 10.1021/JA101527R
Page generated: Wed Dec 16 02:08:06 2020

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