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Ruthenium in PDB 2yak: Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv)

Enzymatic activity of Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv)

All present enzymatic activity of Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv):
2.7.11.1;

Protein crystallography data

The structure of Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv), PDB code: 2yak was solved by L.Feng, Y.Geisselbrecht, S.Blanck, A.Wilbuer, G.E.Atilla-Gokcumen, P.Filippakopoulos, K.Kraeling, M.A.Celik, K.Harms, J.Maksimoska, R.Marmorstein, G.Frenking, S.Knapp, L.-O.Essen, E.Meggers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.53 / 2.20
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.300, 77.800, 111.300, 90.00, 90.00, 90.00
R / Rfree (%) 19.842 / 26.043

Other elements in 2yak:

The structure of Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv) also contains other interesting chemical elements:

Fluorine (F) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv) (pdb code 2yak). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv), PDB code: 2yak:

Ruthenium binding site 1 out of 1 in 2yak

Go back to Ruthenium Binding Sites List in 2yak
Ruthenium binding site 1 out of 1 in the Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Structure of Death-Associated Protein Kinase 1 (DAPK1) in Complex with A Ruthenium Octasporine Ligand (Osv) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru1279

b:23.9
occ:1.00
 RU A:OSV1279 0.0 23.9 1.0
S17 A:OSV1279 1.9 26.1 1.0
S16 A:OSV1279 2.0 28.0 1.0
S18 A:OSV1279 2.0 28.2 1.0
N A:OSV1279 2.0 22.9 1.0
NAK A:OSV1279 2.2 26.5 1.0
NAM A:OSV1279 2.2 27.7 1.0
CAW A:OSV1279 2.8 27.6 1.0
CAV A:OSV1279 2.9 26.0 1.0
C8 A:OSV1279 2.9 32.3 1.0
C9 A:OSV1279 3.0 29.8 1.0
C7 A:OSV1279 3.0 26.4 1.0
C10 A:OSV1279 3.0 29.9 1.0
C11 A:OSV1279 3.1 29.0 1.0
C6 A:OSV1279 3.1 28.9 1.0
C A:OSV1279 3.1 25.3 1.0
CAH A:OSV1279 3.3 31.4 1.0
CAS A:OSV1279 3.4 30.6 1.0
CAG A:OSV1279 3.9 31.3 1.0
CAZ A:OSV1279 4.2 27.4 1.0
CAU A:OSV1279 4.2 26.2 1.0
CAT A:OSV1279 4.4 29.3 1.0
CAO A:OSV1279 4.5 35.9 1.0
S A:OSV1279 4.7 30.6 1.0
CAI A:OSV1279 4.9 31.8 1.0
CD1 A:ILE160 4.9 21.2 1.0

Reference:

L.Feng, Y.Geisselbrecht, S.Blanck, A.Wilbuer, G.E.Atilla-Gokcumen, P.Filippakopoulos, K.Kraeling, M.A.Celik, K.Harms, J.Maksimoska, R.Marmorstein, G.Frenking, S.Knapp, L.O.Essen, E.Meggers. Structurally Sophisticated Octahedral Metal Complexes As Highly Selective Protein Kinase Inhibitors. J.Am.Chem.Soc. V. 133 5976 2011.
ISSN: ISSN 0002-7863
PubMed: 21446733
DOI: 10.1021/JA1112996
Page generated: Thu Oct 10 12:47:16 2024

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