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Ruthenium in PDB 2wpu: Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna

Protein crystallography data

The structure of Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna, PDB code: 2wpu was solved by T.Heinisch, T.Schirmer, J.M.Zimbron, A.Sardo, T.Wohlschlager, J.Gradinaru, M.Creus, T.R.Ward, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.92
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.680, 57.680, 183.694, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 19.8

Other elements in 2wpu:

The structure of Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna (pdb code 2wpu). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna, PDB code: 2wpu:

Ruthenium binding site 1 out of 1 in 2wpu

Go back to Ruthenium Binding Sites List in 2wpu
Ruthenium binding site 1 out of 1 in the Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru400

b:42.0
occ:1.00
RU1 A:KYT400 0.0 42.0 1.0
C12 A:KYT400 2.2 44.2 1.0
C9 A:KYT400 2.2 44.1 1.0
C11 A:KYT400 2.3 44.3 1.0
C8 A:KYT400 2.3 43.8 1.0
C3 A:KYT400 2.4 44.0 1.0
N2 A:KYT400 2.4 35.1 1.0
C7 A:KYT400 2.4 43.8 1.0
N1 A:KYT400 2.5 33.9 1.0
C13 A:KYT400 2.8 30.2 1.0
CL1 A:KYT400 2.8 47.0 1.0
C1 A:KYT400 2.9 29.9 1.0
C10 A:KYT400 3.3 45.5 1.0
C4 A:KYT400 3.5 45.4 1.0
C6 A:KYT400 3.8 45.3 1.0
OG A:SER112 3.9 24.9 1.0
O A:HOH2112 4.2 38.1 1.0
O A:HOH2072 4.3 52.5 1.0
C14 A:KYT400 4.3 28.2 1.0
C2 A:KYT400 4.4 28.4 1.0
O1 A:GOL1136 4.5 85.4 1.0
CB A:SER112 4.6 22.6 1.0
C5 A:KYT400 4.8 45.7 1.0
C2 A:GOL1136 4.9 85.3 1.0
N3 A:KYT400 5.0 26.7 1.0

Reference:

J.M.Zimbron, A.Sardo, T.Heinisch, T.Wohlschlager, J.Gradinaru, C.Massa, T.Schirmer, M.Creus, T.R.Ward. Chemo-Genetic Optimization of Dna Recognition By Metallodrugs Using A Presenter-Protein Strategy. Chemistry V. 16 12883 2010.
ISSN: ISSN 0947-6539
PubMed: 20878805
DOI: 10.1002/CHEM.201001573
Page generated: Mon Jan 25 16:02:18 2021

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