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Ruthenium in PDB 2qcb: T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand

Protein crystallography data

The structure of T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand, PDB code: 2qcb was solved by I.Le Trong, M.Creus, A.Pordea, T.R.Ward, R.E.Stenkamp, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.90 / 1.65
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 57.651, 57.651, 183.823, 90.00, 90.00, 90.00
R / Rfree (%) 16.8 / 18.7

Other elements in 2qcb:

The structure of T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand (pdb code 2qcb). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand, PDB code: 2qcb:

Ruthenium binding site 1 out of 1 in 2qcb

Go back to Ruthenium Binding Sites List in 2qcb
Ruthenium binding site 1 out of 1 in the T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of T7-Tagged Full-Length Streptavidin Complexed with Ruthenium Ligand within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru400

b:30.6
occ:0.20
RU1 A:KYS400 0.0 30.6 0.2
N27 A:KYS400 2.1 30.0 0.2
N26 A:KYS400 2.2 28.1 0.2
C6 A:KYS400 2.2 30.2 0.2
C7 A:KYS400 2.2 30.1 0.2
C5 A:KYS400 2.2 30.2 0.2
C9 A:KYS400 2.2 29.7 0.2
C8 A:KYS400 2.2 29.7 0.2
C10 A:KYS400 2.2 29.8 0.2
CL2 A:KYS400 2.3 30.9 0.2
N26 A:KYS400 2.4 16.6 0.2
O32 A:KYS400 2.7 20.6 0.2
C29 A:KYS400 2.9 29.4 0.2
O31 A:KYS400 3.0 22.1 0.2
C28 A:KYS400 3.0 28.5 0.2
S30 A:KYS400 3.3 20.3 0.4
O31 A:KYS400 3.6 21.2 0.2
O A:HOH510 3.6 53.8 0.8
S30 A:KYS400 3.7 12.7 0.2
O31 A:KYS400 3.7 18.0 0.2
O32 A:KYS400 3.8 21.2 0.2
O32 A:KYS400 4.4 16.8 0.2
C33 A:KYS400 4.7 20.6 0.4
N26 A:KYS400 4.7 22.4 0.2
O A:HOH505 4.7 27.5 0.5
C33 A:KYS400 4.9 18.9 0.2

Reference:

M.Creus, A.Pordea, T.Rossel, A.Sardo, C.Letondor, A.Ivanova, I.Letrong, R.E.Stenkamp, T.R.Ward. X-Ray Structure and Designed Evolution of An Artificial Transfer Hydrogenase Angew.Chem.Int.Ed.Engl. V. 47 1400 2008.
ISSN: ISSN 1433-7851
PubMed: 18176932
DOI: 10.1002/ANIE.200704865
Page generated: Wed Dec 16 02:07:59 2020

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