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Ruthenium in PDB 2mw6: Structure of the Bee Venom Toxin Melittin with [(C5H5)Ru]+ Fragment Attached to the Tryptophan Residue

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Structure of the Bee Venom Toxin Melittin with [(C5H5)Ru]+ Fragment Attached to the Tryptophan Residue (pdb code 2mw6). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Structure of the Bee Venom Toxin Melittin with [(C5H5)Ru]+ Fragment Attached to the Tryptophan Residue, PDB code: 2mw6:

Ruthenium binding site 1 out of 1 in 2mw6

Go back to Ruthenium Binding Sites List in 2mw6
Ruthenium binding site 1 out of 1 in the Structure of the Bee Venom Toxin Melittin with [(C5H5)Ru]+ Fragment Attached to the Tryptophan Residue


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Structure of the Bee Venom Toxin Melittin with [(C5H5)Ru]+ Fragment Attached to the Tryptophan Residue within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru101

b:0.8
occ:1.00
RU A:3UQ101 0.0 0.8 1.0
CZ3 A:TRP19 2.2 1.1 1.0
CH2 A:TRP19 2.2 1.2 1.0
CC2 A:3UQ101 2.2 1.2 1.0
CC3 A:3UQ101 2.2 1.1 1.0
CC1 A:3UQ101 2.2 1.2 1.0
CC4 A:3UQ101 2.2 1.2 1.0
CC5 A:3UQ101 2.2 1.1 1.0
CZ2 A:TRP19 2.3 1.2 1.0
CE3 A:TRP19 2.3 0.8 1.0
CE2 A:TRP19 2.3 0.9 1.0
CD2 A:TRP19 2.4 0.6 1.0
HZ3 A:TRP19 2.9 1.4 1.0
HC2 A:3UQ101 2.9 1.5 1.0
HH2 A:TRP19 2.9 1.5 1.0
HC3 A:3UQ101 2.9 1.2 1.0
HC1 A:3UQ101 3.0 1.5 1.0
HC4 A:3UQ101 3.0 1.3 1.0
HC5 A:3UQ101 3.0 1.2 1.0
HZ2 A:TRP19 3.1 1.4 1.0
HE3 A:TRP19 3.1 1.0 1.0
NE1 A:TRP19 3.4 1.1 1.0
CG A:TRP19 3.5 0.6 1.0
CD1 A:TRP19 3.9 1.0 1.0
HE1 A:TRP19 4.0 1.4 1.0
HB3 A:TRP19 4.3 0.8 1.0
HE2 A:LYS23 4.4 1.4 1.0
CB A:TRP19 4.5 0.7 1.0
HE3 A:LYS23 4.7 1.4 1.0
HD1 A:TRP19 4.9 1.2 1.0

Reference:

D.S.Perekalin, V.V.Novikov, A.A.Pavlov, I.A.Ivanov, N.Y.Anisimova, A.N.Kopylov, D.S.Volkov, I.F.Seregina, M.A.Bolshov, A.R.Kudinov. Selective Ruthenium Labeling of the Tryptophan Residue in the Bee Venom Peptide Melittin. Chemistry V. 21 4923 2015.
ISSN: ISSN 0947-6539
PubMed: 25688543
DOI: 10.1002/CHEM.201406510
Page generated: Wed Dec 16 02:07:58 2020

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