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Ruthenium in PDB 2htt: Ruthenium Hexammine Ion Interactions with Z-Dna

Protein crystallography data

The structure of Ruthenium Hexammine Ion Interactions with Z-Dna, PDB code: 2htt was solved by D.Bharanidharan, S.Thiyagarajan, N.Gautham, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.60
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 35.895, 35.895, 44.604, 90.00, 90.00, 120.00
R / Rfree (%) 25.8 / 36.4

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Ruthenium Hexammine Ion Interactions with Z-Dna (pdb code 2htt). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Ruthenium Hexammine Ion Interactions with Z-Dna, PDB code: 2htt:

Ruthenium binding site 1 out of 1 in 2htt

Go back to Ruthenium Binding Sites List in 2htt
Ruthenium binding site 1 out of 1 in the Ruthenium Hexammine Ion Interactions with Z-Dna


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Ruthenium Hexammine Ion Interactions with Z-Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ru17

b:11.7
occ:0.33
RU E:NRU17 0.0 11.7 0.3
N3 E:NRU17 2.1 11.0 0.3
N1 E:NRU17 2.1 11.2 0.3
N2 E:NRU17 2.1 11.1 0.3
N6 E:NRU17 2.1 10.9 0.3
N4 E:NRU17 2.1 11.4 0.3
N5 E:NRU17 2.1 10.8 0.3
N7 E:DG16 3.8 12.7 1.0
O6 E:DG16 4.3 12.8 1.0
C7 E:DT15 4.6 11.6 0.2
C5 E:DG16 4.7 12.6 1.0
C8 E:DG16 4.8 12.2 1.0
C6 E:DG16 4.9 12.1 1.0
O B:HOH26 4.9 10.1 1.0

Reference:

D.Bharanidharan, S.Thiyagarajan, N.Gautham. Hexammineruthenium(III) Ion Interactions with Z-Dna Acta Crystallogr.,Sect.F V. 63 1008 2007.
ISSN: ESSN 1744-3091
PubMed: 18084080
DOI: 10.1107/S1744309107047781
Page generated: Thu Oct 10 12:46:00 2024

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