Ruthenium in PDB 2bt3: Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms
Enzymatic activity of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms
All present enzymatic activity of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms:
1.4.3.6;
Protein crystallography data
The structure of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms, PDB code: 2bt3
was solved by
D.B.Langley,
A.P.Duff,
H.C.Freeman,
J.M.Guss,
G.A.Juda,
D.M.Dooley,
S.M.Contakes,
N.W.Halpern-Manners,
A.R.Dunn,
H.B.Gray,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.02 /
1.73
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
158.059,
62.905,
92.097,
90.00,
112.11,
90.00
|
R / Rfree (%)
|
15.4 /
17.1
|
Other elements in 2bt3:
The structure of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms also contains other interesting chemical elements:
Ruthenium Binding Sites:
The binding sites of Ruthenium atom in the Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms
(pdb code 2bt3). This binding sites where shown within
5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the
Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms, PDB code: 2bt3:
Jump to Ruthenium binding site number:
1;
2;
Ruthenium binding site 1 out
of 2 in 2bt3
Go back to
Ruthenium Binding Sites List in 2bt3
Ruthenium binding site 1 out
of 2 in the Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 1 of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ru1631
b:31.0
occ:0.30
|
RU
|
A:R4A1631
|
0.0
|
31.0
|
0.3
|
CBB
|
A:R4A1631
|
0.5
|
44.1
|
0.2
|
NBA
|
A:R4A1631
|
1.0
|
43.6
|
0.2
|
HBB
|
A:R4A1631
|
1.4
|
43.0
|
0.2
|
CBC
|
A:R4A1631
|
1.5
|
43.1
|
0.2
|
CBF
|
A:R4A1631
|
1.9
|
44.1
|
0.2
|
NCL
|
A:R4A1631
|
2.1
|
32.1
|
0.3
|
NBL
|
A:R4A1631
|
2.1
|
29.1
|
0.3
|
NBA
|
A:R4A1631
|
2.1
|
30.9
|
0.3
|
NCA
|
A:R4A1631
|
2.1
|
31.3
|
0.3
|
NAA
|
A:R4A1631
|
2.1
|
31.7
|
0.3
|
NAD
|
A:R4A1631
|
2.1
|
31.2
|
0.3
|
CBD
|
A:R4A1631
|
2.3
|
43.7
|
0.2
|
HBC
|
A:R4A1631
|
2.4
|
42.7
|
0.2
|
CBE
|
A:R4A1631
|
2.5
|
43.7
|
0.2
|
HCK
|
A:R4A1631
|
2.5
|
41.4
|
0.2
|
RU
|
A:R4A1631
|
2.8
|
46.8
|
0.2
|
CBF
|
A:R4A1631
|
2.9
|
29.9
|
0.3
|
CCF
|
A:R4A1631
|
2.9
|
34.0
|
0.3
|
CCB
|
A:R4A1631
|
2.9
|
29.0
|
0.3
|
CAC
|
A:R4A1631
|
2.9
|
32.9
|
0.3
|
CAB
|
A:R4A1631
|
2.9
|
33.4
|
0.3
|
CBB
|
A:R4A1631
|
2.9
|
30.3
|
0.3
|
HCB
|
A:R4A1631
|
2.9
|
29.9
|
0.3
|
CBG
|
A:R4A1631
|
2.9
|
28.4
|
0.3
|
CCG
|
A:R4A1631
|
2.9
|
33.4
|
0.3
|
HBB
|
A:R4A1631
|
3.0
|
30.3
|
0.3
|
NAD
|
A:R4A1631
|
3.0
|
43.2
|
0.2
|
CCK
|
A:R4A1631
|
3.0
|
30.6
|
0.3
|
CBK
|
A:R4A1631
|
3.0
|
25.5
|
0.3
|
CAN
|
A:R4A1631
|
3.1
|
35.0
|
0.3
|
CAE
|
A:R4A1631
|
3.1
|
29.1
|
0.3
|
HCK
|
A:R4A1631
|
3.1
|
30.8
|
0.3
|
HBK
|
A:R4A1631
|
3.2
|
25.6
|
0.3
|
HAN
|
A:R4A1631
|
3.2
|
33.5
|
0.3
|
CBG
|
A:R4A1631
|
3.2
|
43.5
|
0.2
|
HAE
|
A:R4A1631
|
3.3
|
29.6
|
0.3
|
CCK
|
A:R4A1631
|
3.3
|
42.4
|
0.2
|
HBD
|
A:R4A1631
|
3.3
|
42.8
|
0.2
|
CAE
|
A:R4A1631
|
3.5
|
43.5
|
0.2
|
HBE
|
A:R4A1631
|
3.5
|
43.0
|
0.2
|
NCL
|
A:R4A1631
|
3.5
|
42.6
|
0.2
|
NAA
|
A:R4A1631
|
3.5
|
44.7
|
0.2
|
CAC
|
A:R4A1631
|
3.5
|
43.4
|
0.2
|
NBL
|
A:R4A1631
|
3.7
|
43.1
|
0.2
|
HAE
|
A:R4A1631
|
3.7
|
42.3
|
0.2
|
CAB
|
A:R4A1631
|
3.8
|
44.5
|
0.2
|
CCC
|
A:R4A1631
|
4.2
|
30.7
|
0.3
|
CBC
|
A:R4A1631
|
4.2
|
29.6
|
0.3
|
CCH
|
A:R4A1631
|
4.3
|
32.5
|
0.3
|
CBH
|
A:R4A1631
|
4.3
|
26.3
|
0.3
|
CCE
|
A:R4A1631
|
4.3
|
33.8
|
0.3
|
CBE
|
A:R4A1631
|
4.3
|
30.6
|
0.3
|
CCJ
|
A:R4A1631
|
4.3
|
30.2
|
0.3
|
CAH
|
A:R4A1631
|
4.3
|
32.0
|
0.3
|
CAK
|
A:R4A1631
|
4.3
|
33.9
|
0.3
|
CBJ
|
A:R4A1631
|
4.3
|
22.9
|
0.3
|
CAM
|
A:R4A1631
|
4.4
|
32.0
|
0.3
|
CAF
|
A:R4A1631
|
4.4
|
29.7
|
0.3
|
CAN
|
A:R4A1631
|
4.4
|
43.6
|
0.2
|
CAF
|
A:R4A1631
|
4.4
|
41.8
|
0.2
|
CBH
|
A:R4A1631
|
4.4
|
42.6
|
0.2
|
CAH
|
A:R4A1631
|
4.5
|
42.4
|
0.2
|
CCJ
|
A:R4A1631
|
4.6
|
41.1
|
0.2
|
HBH
|
A:R4A1631
|
4.7
|
42.0
|
0.2
|
HD1
|
A:TYR307
|
4.7
|
14.9
|
1.0
|
HAN
|
A:R4A1631
|
4.7
|
43.2
|
0.2
|
CCD
|
A:R4A1631
|
4.8
|
32.5
|
0.3
|
CBD
|
A:R4A1631
|
4.8
|
30.0
|
0.3
|
CCI
|
A:R4A1631
|
4.8
|
31.5
|
0.3
|
CBI
|
A:R4A1631
|
4.8
|
28.3
|
0.3
|
CAG
|
A:R4A1631
|
4.9
|
41.5
|
0.2
|
NCA
|
A:R4A1631
|
4.9
|
43.8
|
0.2
|
CCG
|
A:R4A1631
|
4.9
|
42.4
|
0.2
|
CAG
|
A:R4A1631
|
4.9
|
28.8
|
0.3
|
CAK
|
A:R4A1631
|
4.9
|
44.0
|
0.2
|
CAL
|
A:R4A1631
|
4.9
|
34.3
|
0.3
|
HCJ
|
A:R4A1631
|
4.9
|
40.4
|
0.2
|
HCC
|
A:R4A1631
|
5.0
|
30.7
|
0.3
|
|
Ruthenium binding site 2 out
of 2 in 2bt3
Go back to
Ruthenium Binding Sites List in 2bt3
Ruthenium binding site 2 out
of 2 in the Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms
Mono view
Stereo pair view
|
A full contact list of Ruthenium with other atoms in the Ru binding
site number 2 of Agao in Complex with Ruthenium-C4-Wire at 1.73 Angstroms within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ru1631
b:46.8
occ:0.20
|
RU
|
A:R4A1631
|
0.0
|
46.8
|
0.2
|
CAB
|
A:R4A1631
|
0.9
|
33.4
|
0.3
|
CAC
|
A:R4A1631
|
1.3
|
32.9
|
0.3
|
NAA
|
A:R4A1631
|
1.8
|
31.7
|
0.3
|
CAK
|
A:R4A1631
|
2.0
|
33.9
|
0.3
|
NCL
|
A:R4A1631
|
2.1
|
42.6
|
0.2
|
NBL
|
A:R4A1631
|
2.1
|
43.1
|
0.2
|
NBA
|
A:R4A1631
|
2.1
|
43.6
|
0.2
|
NAD
|
A:R4A1631
|
2.1
|
43.2
|
0.2
|
NAA
|
A:R4A1631
|
2.1
|
44.7
|
0.2
|
NCA
|
A:R4A1631
|
2.1
|
43.8
|
0.2
|
NAD
|
A:R4A1631
|
2.2
|
31.2
|
0.3
|
HBB
|
A:R4A1631
|
2.3
|
30.3
|
0.3
|
CAH
|
A:R4A1631
|
2.3
|
32.0
|
0.3
|
CAJ
|
A:R4A1631
|
2.7
|
35.1
|
0.3
|
CBB
|
A:R4A1631
|
2.7
|
30.3
|
0.3
|
CAN
|
A:R4A1631
|
2.8
|
35.0
|
0.3
|
RU
|
A:R4A1631
|
2.8
|
31.0
|
0.3
|
CBF
|
A:R4A1631
|
2.9
|
44.1
|
0.2
|
CAI
|
A:R4A1631
|
2.9
|
32.9
|
0.3
|
NBA
|
A:R4A1631
|
2.9
|
30.9
|
0.3
|
CCF
|
A:R4A1631
|
2.9
|
42.9
|
0.2
|
CBG
|
A:R4A1631
|
2.9
|
43.5
|
0.2
|
CAB
|
A:R4A1631
|
2.9
|
44.5
|
0.2
|
CAC
|
A:R4A1631
|
2.9
|
43.4
|
0.2
|
CCB
|
A:R4A1631
|
2.9
|
43.3
|
0.2
|
CCG
|
A:R4A1631
|
2.9
|
42.4
|
0.2
|
HCB
|
A:R4A1631
|
3.0
|
42.5
|
0.2
|
CBB
|
A:R4A1631
|
3.0
|
44.1
|
0.2
|
CCK
|
A:R4A1631
|
3.0
|
42.4
|
0.2
|
CAL
|
A:R4A1631
|
3.1
|
34.3
|
0.3
|
CAN
|
A:R4A1631
|
3.1
|
43.6
|
0.2
|
HBB
|
A:R4A1631
|
3.1
|
43.0
|
0.2
|
CAE
|
A:R4A1631
|
3.1
|
43.5
|
0.2
|
CBK
|
A:R4A1631
|
3.1
|
42.1
|
0.2
|
HCK
|
A:R4A1631
|
3.2
|
41.4
|
0.2
|
HAN
|
A:R4A1631
|
3.2
|
43.2
|
0.2
|
HAE
|
A:R4A1631
|
3.2
|
42.3
|
0.2
|
HBK
|
A:R4A1631
|
3.3
|
41.4
|
0.2
|
CAE
|
A:R4A1631
|
3.3
|
29.1
|
0.3
|
CAM
|
A:R4A1631
|
3.3
|
32.0
|
0.3
|
CAG
|
A:R4A1631
|
3.5
|
28.8
|
0.3
|
CBC
|
A:R4A1631
|
3.7
|
29.6
|
0.3
|
HAJ
|
A:R4A1631
|
3.7
|
34.2
|
0.3
|
HAN
|
A:R4A1631
|
3.7
|
33.5
|
0.3
|
HCB
|
A:R4A1631
|
3.7
|
29.9
|
0.3
|
CAF
|
A:R4A1631
|
3.8
|
29.7
|
0.3
|
HAI
|
A:R4A1631
|
3.9
|
33.2
|
0.3
|
CBF
|
A:R4A1631
|
3.9
|
29.9
|
0.3
|
HBC
|
A:R4A1631
|
4.1
|
29.8
|
0.3
|
NCA
|
A:R4A1631
|
4.1
|
31.3
|
0.3
|
HAE
|
A:R4A1631
|
4.2
|
29.6
|
0.3
|
CCC
|
A:R4A1631
|
4.2
|
42.5
|
0.2
|
CBH
|
A:R4A1631
|
4.2
|
42.6
|
0.2
|
CBC
|
A:R4A1631
|
4.2
|
43.1
|
0.2
|
CCH
|
A:R4A1631
|
4.3
|
41.5
|
0.2
|
CCB
|
A:R4A1631
|
4.3
|
29.0
|
0.3
|
CBE
|
A:R4A1631
|
4.3
|
43.7
|
0.2
|
CCE
|
A:R4A1631
|
4.3
|
42.7
|
0.2
|
CCJ
|
A:R4A1631
|
4.3
|
41.1
|
0.2
|
NBL
|
A:R4A1631
|
4.3
|
29.1
|
0.3
|
CAH
|
A:R4A1631
|
4.3
|
42.4
|
0.2
|
CAK
|
A:R4A1631
|
4.3
|
44.0
|
0.2
|
CBJ
|
A:R4A1631
|
4.4
|
41.2
|
0.2
|
CAM
|
A:R4A1631
|
4.4
|
43.6
|
0.2
|
HAM
|
A:R4A1631
|
4.4
|
33.2
|
0.3
|
CAF
|
A:R4A1631
|
4.4
|
41.8
|
0.2
|
HAG
|
A:R4A1631
|
4.4
|
29.7
|
0.3
|
CL1
|
A:R4A1631
|
4.4
|
37.0
|
0.3
|
NCL
|
A:R4A1631
|
4.5
|
32.1
|
0.3
|
HL12
|
A:R4A1631
|
4.6
|
36.4
|
0.3
|
CBG
|
A:R4A1631
|
4.6
|
28.4
|
0.3
|
CBD
|
A:R4A1631
|
4.7
|
30.0
|
0.3
|
CBE
|
A:R4A1631
|
4.8
|
30.6
|
0.3
|
HL11
|
A:R4A1631
|
4.8
|
36.4
|
0.3
|
CCD
|
A:R4A1631
|
4.8
|
42.1
|
0.2
|
CBD
|
A:R4A1631
|
4.8
|
43.7
|
0.2
|
CBI
|
A:R4A1631
|
4.8
|
42.1
|
0.2
|
CCI
|
A:R4A1631
|
4.8
|
40.5
|
0.2
|
HAF
|
A:R4A1631
|
4.9
|
29.2
|
0.3
|
CAG
|
A:R4A1631
|
4.9
|
41.5
|
0.2
|
CAL
|
A:R4A1631
|
4.9
|
43.3
|
0.2
|
HCK
|
A:R4A1631
|
4.9
|
30.8
|
0.3
|
|
Reference:
S.M.Contakes,
G.A.Juda,
D.B.Langley,
N.W.Halpern-Manners,
A.P.Duff,
A.R.Dunn,
H.B.Gray,
D.M.Dooley,
J.M.Guss,
H.C.Freeman.
Reversible Inhibition of Copper Amine Oxidase Activity By Channel-Blocking Ruthenium(II) and Rhenium(I) Molecular Wires. Proc.Natl.Acad.Sci.Usa V. 102 13451 2005.
ISSN: ISSN 0027-8424
PubMed: 16157884
DOI: 10.1073/PNAS.0506336102
Page generated: Thu Oct 10 12:43:56 2024
|