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Ruthenium in PDB 1t3p: Half-Sandwich Arene Ruthenium(II)-Enzyme Complex

Enzymatic activity of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex

All present enzymatic activity of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex:
3.2.1.17;

Protein crystallography data

The structure of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex, PDB code: 1t3p was solved by I.W.Mcnae, K.Fishburne, A.Habtemariam, T.M.Hunter, M.Melchart, F.Wang, M.D.Walkinshaw, P.J.Sadler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 56.80 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.142, 80.142, 37.064, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.7

Other elements in 1t3p:

The structure of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Sodium (Na) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex (pdb code 1t3p). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex, PDB code: 1t3p:

Ruthenium binding site 1 out of 1 in 1t3p

Go back to Ruthenium Binding Sites List in 1t3p
Ruthenium binding site 1 out of 1 in the Half-Sandwich Arene Ruthenium(II)-Enzyme Complex


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Half-Sandwich Arene Ruthenium(II)-Enzyme Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru233

b:26.6
occ:1.00
RU1 A:RU7233 0.0 26.6 1.0
C2 A:RU7233 2.2 24.2 1.0
NE2 A:HIS15 2.2 19.1 1.0
C3 A:RU7233 2.2 24.5 1.0
C1 A:RU7233 2.3 25.3 1.0
CL2 A:RU7233 2.3 29.4 1.0
C6 A:RU7233 2.3 27.3 1.0
C4 A:RU7233 2.3 27.5 1.0
C5 A:RU7233 2.4 27.9 1.0
CL1 A:RU7233 2.4 27.3 1.0
CE1 A:HIS15 3.1 19.5 1.0
CD2 A:HIS15 3.2 20.8 1.0
C7 A:RU7233 3.4 27.8 1.0
C8 A:RU7233 3.5 31.7 1.0
C9 A:RU7233 3.8 32.6 1.0
O A:HOH235 4.1 38.6 1.0
ND1 A:HIS15 4.3 20.1 1.0
CG A:HIS15 4.3 19.4 1.0
C10 A:RU7233 4.7 32.9 1.0
OD1 A:ASP87 4.8 24.4 1.0

Reference:

I.W.Mcnae, K.Fishburne, A.Habtemariam, T.M.Hunter, M.Melchart, F.Wang, M.D.Walkinshaw, P.J.Sadler. Half-Sandwich Arene Ruthenium(II)-Enzyme Complex Chem.Commun.(Camb.) V. 16 1786 2004.
ISSN: ISSN 1359-7345
PubMed: 15306883
DOI: 10.1039/B408141B
Page generated: Wed Dec 16 02:07:50 2020

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