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Ruthenium in PDB 1qmq: Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates

Enzymatic activity of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates

All present enzymatic activity of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates:
1.14.15.1;

Protein crystallography data

The structure of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates, PDB code: 1qmq was solved by B.R.Crane, I.J.Dmochowski, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.390, 74.470, 91.730, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 22.6

Other elements in 1qmq:

The structure of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates also contains other interesting chemical elements:

Iron (Fe) 1 atom

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates (pdb code 1qmq). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates, PDB code: 1qmq:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 1qmq

Go back to Ruthenium Binding Sites List in 1qmq
Ruthenium binding site 1 out of 2 in the Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru418

b:51.4
occ:0.24
RU A:DRB418 0.0 51.4 0.2
RU A:DRB419 0.5 51.1 0.4
N14 A:DRB419 1.6 50.6 0.4
N14 A:DRB418 2.0 50.6 0.2
N2 A:DRB418 2.0 50.8 0.2
N26 A:DRB418 2.0 50.7 0.2
N37 A:DRB418 2.0 50.7 0.2
N13 A:DRB418 2.0 50.7 0.2
N25 A:DRB418 2.1 50.6 0.2
N26 A:DRB419 2.1 50.7 0.4
N2 A:DRB419 2.1 50.7 0.4
N37 A:DRB419 2.1 50.7 0.4
N25 A:DRB419 2.1 50.5 0.4
N13 A:DRB419 2.5 50.6 0.4
C19 A:DRB419 2.5 50.5 0.4
C15 A:DRB419 2.6 50.5 0.4
C20 A:DRB419 2.7 50.4 0.4
C32 A:DRB418 2.9 50.7 0.2
C19 A:DRB418 2.9 50.5 0.2
C31 A:DRB418 2.9 50.6 0.2
C8 A:DRB418 2.9 50.7 0.2
C3 A:DRB419 2.9 50.7 0.4
C7 A:DRB418 2.9 50.8 0.2
C20 A:DRB418 2.9 50.4 0.2
C31 A:DRB419 2.9 50.8 0.4
C32 A:DRB419 2.9 50.8 0.4
C3 A:DRB418 3.0 50.8 0.2
C27 A:DRB419 3.0 50.7 0.4
C15 A:DRB418 3.0 50.6 0.2
C27 A:DRB418 3.0 50.6 0.2
C36 A:DRB418 3.0 50.7 0.2
C24 A:DRB418 3.1 50.4 0.2
C12 A:DRB418 3.1 50.7 0.2
C7 A:DRB419 3.1 50.7 0.4
C36 A:DRB419 3.1 50.8 0.4
C8 A:DRB419 3.2 50.6 0.4
C24 A:DRB419 3.3 50.4 0.4
C12 A:DRB419 3.5 50.6 0.4
C18 A:DRB419 3.8 50.5 0.4
C16 A:DRB419 3.9 50.5 0.4
C21 A:DRB419 4.1 50.1 0.4
C33 A:DRB418 4.2 50.6 0.2
C9 A:DRB418 4.2 50.6 0.2
C6 A:DRB418 4.2 50.7 0.2
C30 A:DRB418 4.2 50.5 0.2
C18 A:DRB418 4.2 50.5 0.2
C30 A:DRB419 4.2 50.8 0.4
C33 A:DRB419 4.2 50.8 0.4
C21 A:DRB418 4.2 50.1 0.2
C4 A:DRB419 4.3 50.7 0.4
C4 A:DRB418 4.3 50.8 0.2
C28 A:DRB419 4.3 50.7 0.4
C35 A:DRB418 4.3 50.6 0.2
C16 A:DRB418 4.3 50.5 0.2
C11 A:DRB418 4.3 50.6 0.2
C28 A:DRB418 4.3 50.5 0.2
C17 A:DRB419 4.3 50.5 0.4
C23 A:DRB418 4.4 50.0 0.2
C6 A:DRB419 4.4 50.7 0.4
C35 A:DRB419 4.4 50.7 0.4
C23 A:DRB419 4.5 50.0 0.4
C9 A:DRB419 4.6 50.6 0.4
C11 A:DRB419 4.8 50.6 0.4
C29 A:DRB419 4.8 50.8 0.4
C5 A:DRB418 4.8 50.8 0.2
C34 A:DRB418 4.8 50.6 0.2
C29 A:DRB418 4.8 50.4 0.2
C10 A:DRB418 4.8 50.6 0.2
C17 A:DRB418 4.8 50.4 0.2
C34 A:DRB419 4.8 50.8 0.4
C5 A:DRB419 4.8 50.7 0.4
C22 A:DRB419 4.8 49.8 0.4
C22 A:DRB418 4.9 49.7 0.2

Ruthenium binding site 2 out of 2 in 1qmq

Go back to Ruthenium Binding Sites List in 1qmq
Ruthenium binding site 2 out of 2 in the Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru419

b:51.1
occ:0.38
RU A:DRB419 0.0 51.1 0.4
RU A:DRB418 0.5 51.4 0.2
N26 A:DRB418 1.7 50.7 0.2
N2 A:DRB418 1.9 50.8 0.2
N13 A:DRB419 2.0 50.6 0.4
N37 A:DRB419 2.0 50.7 0.4
N14 A:DRB419 2.0 50.6 0.4
N2 A:DRB419 2.0 50.7 0.4
N26 A:DRB419 2.0 50.7 0.4
N25 A:DRB419 2.0 50.5 0.4
N25 A:DRB418 2.1 50.6 0.2
N13 A:DRB418 2.1 50.7 0.2
N37 A:DRB418 2.3 50.7 0.2
N14 A:DRB418 2.4 50.6 0.2
C27 A:DRB418 2.6 50.6 0.2
C31 A:DRB418 2.7 50.6 0.2
C7 A:DRB418 2.8 50.8 0.2
C3 A:DRB418 2.8 50.8 0.2
C8 A:DRB418 2.9 50.7 0.2
C8 A:DRB419 2.9 50.6 0.4
C32 A:DRB419 2.9 50.8 0.4
C19 A:DRB419 2.9 50.5 0.4
C7 A:DRB419 2.9 50.7 0.4
C20 A:DRB419 2.9 50.4 0.4
C31 A:DRB419 2.9 50.8 0.4
C32 A:DRB418 2.9 50.7 0.2
C24 A:DRB418 2.9 50.4 0.2
C27 A:DRB419 3.0 50.7 0.4
C3 A:DRB419 3.0 50.7 0.4
C12 A:DRB419 3.0 50.6 0.4
C24 A:DRB419 3.0 50.4 0.4
C36 A:DRB419 3.0 50.8 0.4
C15 A:DRB419 3.1 50.5 0.4
C20 A:DRB418 3.1 50.4 0.2
C19 A:DRB418 3.2 50.5 0.2
C12 A:DRB418 3.2 50.7 0.2
C15 A:DRB418 3.4 50.6 0.2
C36 A:DRB418 3.4 50.7 0.2
C28 A:DRB418 3.9 50.5 0.2
C30 A:DRB418 4.0 50.5 0.2
C6 A:DRB418 4.1 50.7 0.2
C4 A:DRB418 4.1 50.8 0.2
C9 A:DRB419 4.2 50.6 0.4
C9 A:DRB418 4.2 50.6 0.2
C33 A:DRB419 4.2 50.8 0.4
C18 A:DRB419 4.2 50.5 0.4
C30 A:DRB419 4.2 50.8 0.4
C6 A:DRB419 4.2 50.7 0.4
C21 A:DRB419 4.2 50.1 0.4
C33 A:DRB418 4.3 50.6 0.2
C23 A:DRB418 4.3 50.0 0.2
C11 A:DRB419 4.3 50.6 0.4
C28 A:DRB419 4.3 50.7 0.4
C35 A:DRB419 4.3 50.7 0.4
C4 A:DRB419 4.3 50.7 0.4
C16 A:DRB419 4.3 50.5 0.4
C23 A:DRB419 4.3 50.0 0.4
C21 A:DRB418 4.4 50.1 0.2
C11 A:DRB418 4.4 50.6 0.2
C29 A:DRB418 4.5 50.4 0.2
C18 A:DRB418 4.5 50.5 0.2
C5 A:DRB418 4.6 50.8 0.2
C35 A:DRB418 4.6 50.6 0.2
C16 A:DRB418 4.7 50.5 0.2
C10 A:DRB419 4.8 50.6 0.4
C29 A:DRB419 4.8 50.8 0.4
C34 A:DRB419 4.8 50.8 0.4
C5 A:DRB419 4.8 50.7 0.4
C17 A:DRB419 4.8 50.5 0.4
C10 A:DRB418 4.8 50.6 0.2
C22 A:DRB419 4.8 49.8 0.4
C22 A:DRB418 4.9 49.7 0.2
C34 A:DRB418 5.0 50.6 0.2

Reference:

I.J.Dmochowski, B.R.Crane, J.J.Wilker, J.R.Winkler, H.B.Gray. Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates Proc.Natl.Acad.Sci.Usa V. 96 12987 1999.
ISSN: ISSN 0027-8424
PubMed: 10557259
DOI: 10.1073/PNAS.96.23.12987
Page generated: Wed Dec 16 02:07:49 2020

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