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Ruthenium in PDB 1o3z: Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked

Protein crystallography data

The structure of Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked, PDB code: 1o3z was solved by E.Ennifar, P.Walter, P.Dumas, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.65
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.100, 59.100, 64.100, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 22.8

Other elements in 1o3z:

The structure of Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked (pdb code 1o3z). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 3 binding sites of Ruthenium where determined in the Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked, PDB code: 1o3z:
Jump to Ruthenium binding site number: 1; 2; 3;

Ruthenium binding site 1 out of 3 in 1o3z

Go back to Ruthenium Binding Sites List in 1o3z
Ruthenium binding site 1 out of 3 in the Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked within 5.0Å range:

Ruthenium binding site 2 out of 3 in 1o3z

Go back to Ruthenium Binding Sites List in 1o3z
Ruthenium binding site 2 out of 3 in the Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked within 5.0Å range:

Ruthenium binding site 3 out of 3 in 1o3z

Go back to Ruthenium Binding Sites List in 1o3z
Ruthenium binding site 3 out of 3 in the Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 3 of Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ru502

b:56.6
occ:0.67
O B:HOH608 1.2 61.7 1.0
O B:HOH603 2.1 45.7 1.0
O B:HOH570 2.9 62.0 1.0
O6 B:G23 4.2 40.5 1.0
N7 B:G23 4.3 41.4 1.0
O B:HOH595 4.9 59.0 1.0
C6 B:G23 5.0 40.6 1.0
N7 B:A22 5.0 43.5 1.0

Reference:

E.Ennifar, P.Walter, P.Dumas. A Crystallographic Study of the Binding of 13 Metal Ions to Two Related Rna Duplexes. Nucleic Acids Res. V. 31 2671 2003.
ISSN: ISSN 0305-1048
PubMed: 12736317
DOI: 10.1093/NAR/GKG350
Page generated: Mon Jan 25 16:02:16 2021

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