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Ruthenium in PDB 1jzf: Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83)

Protein crystallography data

The structure of Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83), PDB code: 1jzf was solved by B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.78 / 1.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 52.776, 61.441, 75.956, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 22

Other elements in 1jzf:

The structure of Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83) also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83) (pdb code 1jzf). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total only one binding site of Ruthenium was determined in the Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83), PDB code: 1jzf:

Ruthenium binding site 1 out of 1 in 1jzf

Go back to Ruthenium Binding Sites List in 1jzf
Ruthenium binding site 1 out of 1 in the Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83)


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru903

b:12.2
occ:1.00
RU A:RTB903 0.0 12.2 1.0
N3 A:RTB903 2.0 12.1 1.0
N2 A:RTB903 2.0 12.2 1.0
N6 A:RTB903 2.0 12.3 1.0
N5 A:RTB903 2.0 12.1 1.0
N4 A:RTB903 2.0 12.2 1.0
NE2 A:HIS83 2.0 12.0 1.0
C11 A:RTB903 2.8 12.5 1.0
C21 A:RTB903 2.8 12.5 1.0
C16 A:RTB903 2.8 12.2 1.0
C27 A:RTB903 2.9 12.4 1.0
C22 A:RTB903 2.9 11.9 1.0
C12 A:RTB903 2.9 12.1 1.0
CE1 A:HIS83 2.9 12.0 1.0
C7 A:RTB903 3.0 12.6 1.0
C23 A:RTB903 3.0 11.8 1.0
C28 A:RTB903 3.1 12.3 1.0
C17 A:RTB903 3.1 12.4 1.0
CD2 A:HIS83 3.1 12.0 1.0
ND1 A:HIS83 4.1 12.1 1.0
C10 A:RTB903 4.1 12.5 1.0
C20 A:RTB903 4.2 12.5 1.0
C15 A:RTB903 4.2 12.3 1.0
C13 A:RTB903 4.2 12.2 1.0
C31 A:RTB903 4.2 12.4 1.0
CG A:HIS83 4.2 11.8 1.0
C26 A:RTB903 4.2 11.7 1.0
C8 A:RTB903 4.2 12.7 1.0
C29 A:RTB903 4.3 12.4 1.0
C24 A:RTB903 4.4 11.7 1.0
C18 A:RTB903 4.4 12.4 1.0
C14 A:RTB903 4.7 12.4 1.0
C9 A:RTB903 4.7 12.6 1.0
C30 A:RTB903 4.8 12.7 1.0
C19 A:RTB903 4.8 12.4 1.0
C25 A:RTB903 4.8 11.7 1.0
O A:HOH1169 4.8 32.9 1.0
O A:HOH1012 4.8 16.9 1.0

Reference:

B.R.Crane, A.J.Di Bilio, J.R.Winkler, H.B.Gray. Electron Tunneling in Single Crystals of Pseudomonas Aeruginosa Azurins. J.Am.Chem.Soc. V. 123 11623 2001.
ISSN: ISSN 0002-7863
PubMed: 11716717
DOI: 10.1021/JA0115870
Page generated: Wed Dec 16 02:07:49 2020

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