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Ruthenium in PDB 1bex: Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin

Protein crystallography data

The structure of Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin, PDB code: 1bex was solved by S.Faham, M.W.Day, D.C.Rees, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 100.600, 35.400, 74.700, 90.00, 106.50, 90.00
R / Rfree (%) 20.9 / 28.9

Other elements in 1bex:

The structure of Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Ruthenium Binding Sites:

The binding sites of Ruthenium atom in the Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin (pdb code 1bex). This binding sites where shown within 5.0 Angstroms radius around Ruthenium atom.
In total 2 binding sites of Ruthenium where determined in the Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin, PDB code: 1bex:
Jump to Ruthenium binding site number: 1; 2;

Ruthenium binding site 1 out of 2 in 1bex

Go back to Ruthenium Binding Sites List in 1bex
Ruthenium binding site 1 out of 2 in the Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 1 of Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ru130

b:35.6
occ:1.00
RU A:RBU130 0.0 35.6 1.0
N3 A:RBU130 2.0 24.1 0.5
N4 A:RBU130 2.1 25.5 0.5
N1 A:RBU130 2.1 32.1 1.0
N2 A:RBU130 2.1 30.2 1.0
NE2 A:HIS83 2.1 12.4 1.0
N5 A:RBU130 2.1 27.6 0.5
C15 A:RBU130 2.9 26.1 0.5
C16 A:RBU130 2.9 24.4 0.5
C5 A:RBU130 2.9 30.6 1.0
C6 A:RBU130 2.9 28.3 1.0
CD2 A:HIS83 3.0 8.4 1.0
C11 A:RBU130 3.0 24.0 0.5
C20 A:RBU130 3.1 22.0 0.5
C1 A:RBU130 3.1 36.5 1.0
C10 A:RBU130 3.1 31.1 1.0
C21 A:RBU130 3.1 27.6 0.5
CE1 A:HIS83 3.2 8.4 1.0
C23 A:RBU130 3.2 26.2 0.5
C14 A:RBU130 4.2 25.7 0.5
CG A:HIS83 4.2 6.9 1.0
C17 A:RBU130 4.2 22.8 0.5
ND1 A:HIS83 4.2 13.3 1.0
C7 A:RBU130 4.2 27.5 1.0
C4 A:RBU130 4.2 32.6 1.0
C12 A:RBU130 4.3 18.8 0.5
N6 A:RBU130 4.3 22.1 0.5
C19 A:RBU130 4.3 23.2 0.5
C22 A:RBU130 4.4 21.9 0.5
C9 A:RBU130 4.4 33.8 1.0
C2 A:RBU130 4.4 33.4 1.0
C13 A:RBU130 4.7 22.9 0.5
C18 A:RBU130 4.8 23.5 0.5
C8 A:RBU130 4.8 31.1 1.0
C3 A:RBU130 4.8 33.9 1.0

Ruthenium binding site 2 out of 2 in 1bex

Go back to Ruthenium Binding Sites List in 1bex
Ruthenium binding site 2 out of 2 in the Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin


Mono view


Stereo pair view

A full contact list of Ruthenium with other atoms in the Ru binding site number 2 of Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ru130

b:22.2
occ:1.00
RU B:RBU130 0.0 22.2 1.0
N3 B:RBU130 2.1 13.6 0.5
N1 B:RBU130 2.1 23.8 1.0
NE2 B:HIS83 2.1 11.3 1.0
N4 B:RBU130 2.1 15.0 0.5
N2 B:RBU130 2.1 22.1 1.0
N5 B:RBU130 2.1 18.5 0.5
C15 B:RBU130 2.9 9.1 0.5
C16 B:RBU130 2.9 11.2 0.5
C5 B:RBU130 2.9 27.8 1.0
CE1 B:HIS83 2.9 10.5 1.0
C6 B:RBU130 2.9 27.4 1.0
C11 B:RBU130 3.0 9.0 0.5
C1 B:RBU130 3.1 25.9 1.0
C20 B:RBU130 3.1 14.4 0.5
C10 B:RBU130 3.1 22.9 1.0
C21 B:RBU130 3.1 18.2 0.5
C23 B:RBU130 3.2 20.5 0.5
CD2 B:HIS83 3.2 11.3 1.0
ND1 B:HIS83 4.1 11.9 1.0
C14 B:RBU130 4.2 10.9 0.5
C4 B:RBU130 4.2 25.6 1.0
C17 B:RBU130 4.2 12.2 0.5
C7 B:RBU130 4.3 28.1 1.0
CG B:HIS83 4.3 8.1 1.0
N6 B:RBU130 4.3 20.8 0.5
C22 B:RBU130 4.3 20.8 0.5
C12 B:RBU130 4.3 10.9 0.5
C2 B:RBU130 4.3 24.4 1.0
C19 B:RBU130 4.4 14.6 0.5
C9 B:RBU130 4.4 27.6 1.0
C13 B:RBU130 4.8 7.8 0.5
C3 B:RBU130 4.8 27.5 1.0
C18 B:RBU130 4.8 13.6 0.5
C8 B:RBU130 4.9 26.3 1.0

Reference:

S.Faham, M.W.Day, W.B.Connick, B.R.Crane, A.J.Di Bilio, W.P.Schaefer, D.C.Rees, H.B.Gray. Structures of Ruthenium-Modified Pseudomonas Aeruginosa Azurin and [Ru(2,2'-Bipyridine)2(Imidazole)2]SO4 X 10H2O. Acta Crystallogr.,Sect.D V. 55 379 1999.
ISSN: ISSN 0907-4449
PubMed: 10089343
DOI: 10.1107/S0907444998010464
Page generated: Wed Dec 16 02:07:49 2020

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