Chemical elements
  Ruthenium
    Isotopes
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    Physical Properties
    Chemical Properties
    PDB 1bex-4e7y
      1bex
      1jze
      1jzf
      1jzg
      1jzh
      1k2o
      1o3z
      1qmq
      1t3p
      2bt3
      2bt6
      2bzh
      2bzi
      2bzj
      2cfd
      2cfg
      2cfk
      2cfl
      2cfw
      2cg0
      2cg1
      2hto
      2htt
      2iwi
      2jld
      2oi4
      2qcb
      2wpu
      2xjw
      3csf
      3cst
      3dd3
      3fxs
      3fxz
      3fy0
      3m0b
      3m1j
      3m1s
      3npl
      3pup
      3q4c
      3s80
      3u38
      4daw
      4e1u
      4e7y

Ruthenium in PDB, part 1 (1-46), PDB files 1bex - 4e7y






Experimental structures of coordination spheres of Ruthenium (Ru) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Ruthenium atoms.
PDB files 1-46 (1bex - 4e7y):
  1. 1bex - Structure of Ruthenium-Modified Pseudomonas Aeruginosa Azurin
  2. 1jze - Pseudomonas Aeruginosa Azurin Ru(Bpy)2(Im)(HIS83)
  3. 1jzf - Pseudomonas Aeruginosa Oxidized Azurin(CU2+) Ru(Tpy)(Phen) (HIS83)
  4. 1jzg - Pseudomonas Aeruginosa Reduced Azurin (CU1+) Ru(Tpy)(Phen) (HIS83)
  5. 1jzh - Pseudomonas Aeruginosa Azurin Ru(Tpy)(Bpy)(HIS83)
  6. 1k2o - Cytochrome P450CAM With Bound Bis(2,2'-Bipyridine)-(5-Methyl-2-2'- Bipyridine)-C2-Adamantane Ruthenium (II)
  7. 1o3z - Hiv-1 Dis(Mal) Duplex Ru Hexamine-Soaked
  8. 1qmq - Optical Detection of Cytochrome P450 By Sensitizer-Linked Substrates
  9. 1t3p - Half-Sandwich Arene Ruthenium(II)-Enzyme Complex
  10. 2bt3 - Agao in Complex With Ruthenium-C4-Wire At 1.73 Angstroms
  11. 2bt6 - Ru(Bpy)2(Mbpy)-Modified Bovine Adrenodoxin
  12. 2bzh - Crystal Structure of the Human PIM1 in Complex With A Ruthenium Organometallic Ligand RU1
  13. 2bzi - Crystal Structure of the Human PIM1 in Complex With A Ruthenium Organometallic Ligand RU2
  14. 2bzj - Crystal Structure of the Human PIM1 in Complex With A Ruthenium Organometallic Ligand RU3
  15. 2cfd - Agao in Complex With WC4L3 (Ru-Wire Inhibitor, 4-Carbon Linker, Lambda Enantiomer, Data Set 3)
  16. 2cfg - Agao in Complex With WC4D3 (Ru-Wire Inhibitor, 4-Carbon Linker, Delta Enantiomer, Data Set 3)
  17. 2cfk - Agao in Complex With WC5 (Ru-Wire Inhibitor, 5-Carbon Linker)
  18. 2cfl - Agao in Complex With WC6B (Ru-Wire Inhibitor, 6-Carbon Linker, Data Set B)
  19. 2cfw - Agao in Complex With WC7A (Ru-Wire Inhibitor, 7-Carbon Linker, Data Set A)
  20. 2cg0 - Agao in Complex With WC9A (Ru-Wire Inhibitor, 9-Carbon Linker, Data Set A)
  21. 2cg1 - Agao in Complex With WC11B (Ru-Wire Inhibitor, 11-Carbon Linker, Data Set B)
  22. 2hto - Ruthenium Hexammine Ion Interactions With Z-Dna
  23. 2htt - Ruthenium Hexammine Ion Interactions With Z-Dna
  24. 2iwi - Crystal Structure of the Human PIM2 in Complex With A Ruthenium Organometallic Ligand RU1
  25. 2jld - Extremely Tight Binding of Ruthenium Complex to Glycogen Synthase Kinase 3
  26. 2oi4 - Crystal Structure of Human PIM1 in Complex With Fluorinated Ruthenium Pyridocarbazole
  27. 2qcb - T7-Tagged Full-Length Streptavidin Complexed With Ruthenium Ligand
  28. 2wpu - Chaperoned Ruthenium Metallodrugs That Recognize Telomeric Dna
  29. 2xjw - Lysozyme-Co Releasing Molecule Adduct
  30. 3csf - Crystal Structure of PI3K P110GAMMA Catalytical Domain in Complex With Organoruthenium Inhibitor DW2
  31. 3cst - Crystal Structure of PI3K P110GAMMA Catalytical Domain in Complex With Organoruthenium Inhibitor E5E2
  32. 3dd3 - Crystal Structure of The Glutathione Transferase Pi Enzyme in Complex With the Bifunctional Inhibitor, Etharapta
  33. 3fxs - Metal Exchange in Thermolysin
  34. 3fxz - Crystal Structure of PAK1 Kinase Domain With Ruthenium Complex Lambda-FL172
  35. 3fy0 - Crystal Structure of PAK1 Kinase Domain With Ruthenium Complex DW1
  36. 3m0b - Ru-Porphyrin Protein Scaffolds For Sensing O2
  37. 3m1j - The Crystal Structure Of A Nami A-Carbonic Anhydrase II Adduct Discloses the Mode Of Action of This Novel Anticancer Metallodrug
  38. 3m1s - Structure of Ruthenium Half-Sandwich Complex Bound to Glycogen Synthase Kinase 3
  39. 3npl - Structure of Ru(Bpy)2(A-Phen)(K97C) P450 BM3 Heme Domain, A Ruthenium Modified P450 BM3 Mutant
  40. 3pup - Structure of Glycogen Synthase Kinase 3 Beta (GSK3B) in Complex With A Ruthenium Octasporine Ligand (OS1)
  41. 3q4c - Crystal Structure of Wild Type Braf Kinase Domain in Complex With Organometallic Inhibitor CNS292
  42. 3s80 - Crystal Form 2 of A Chiral Ruthenium Complex Bound to Dna
  43. 3u38 - Intercalation of Lambda-[Ru(Phen)2(Dppz)]2+ Into D(Ccggtaccgg)2
  44. 4daw - Crystal Structure of PAK1 Kinase Domain With the Ruthenium Phthalimide Complex
  45. 4e1u - [Ru(Bpy)2 Dppz]2+ Bound to Dna
  46. 4e7y - Lambda-[Ru(Phen)2(Dppz)]2+ Bound to Ccggatccgg


Acknowledgement

We would like to acknowledge that these pictures of PDB structures of Ruthenium coordination spheres were produced with valuable advice from our colleagues from http://3dpdb.com.
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